DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and srsf1b

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_956887.2 Gene:srsf1b / 393565 ZFINID:ZDB-GENE-040426-1467 Length:245 Species:Danio rerio


Alignment Length:73 Identity:22/73 - (30%)
Similarity:41/73 - (56%) Gaps:3/73 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ::|||:|.:...:.::::|.:.|.:..:.|. :|..|.|  |.|.|::|...|..|:...:||:.
Zfish    17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAEDAVYGRDGYDY 78

  Fly    83 GGRTLRVD 90
            .|..|||:
Zfish    79 DGYRLRVE 86

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/73 (30%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
srsf1bNP_956887.2 RRM1_SRSF1 11..89 CDD:410010 22/73 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..116
RRM2_SRSF1 112..195 CDD:410160
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 192..245
Blue background indicates that the domain is not in the aligned region.

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