DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Srsf4

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001102155.1 Gene:Srsf4 / 362612 RGDID:1561347 Length:488 Species:Rattus norvegicus


Alignment Length:101 Identity:27/101 - (26%)
Similarity:46/101 - (45%) Gaps:21/101 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNG 79
            |..|::|.:.|:|.|..::..|...|.:|.:.|        ..|:||.|:.|...|..|:..|||
  Rat     1 MPRVYIGRLSYQARERDVERFFKGYGKILEVDL--------KNGYGFVEFDDLRDADDAVYELNG 57

  Fly    80 YEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYG 115
            .::.|..:.|::|             :||:.:..||
  Rat    58 KDLCGERVIVEHA-------------RGPRRDGSYG 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 25/96 (26%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 21/73 (29%)
CSTF2_hinge 112..190 CDD:291025 2/4 (50%)
CSTF_C 377..416 CDD:291002
Srsf4NP_001102155.1 RRM1_SRSF4_like 3..72 CDD:240783 22/89 (25%)
RRM2_SRSF4_like 104..175 CDD:241044
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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