DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Tial1

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001013211.1 Gene:Tial1 / 361655 RGDID:1595845 Length:392 Species:Rattus norvegicus


Alignment Length:353 Identity:78/353 - (22%)
Similarity:125/353 - (35%) Gaps:105/353 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ||||::..|.|.|.:|..|:..|.:...::|.|..:||.||:||..:.::..|.:|:.::.|..:
  Rat   116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180

  Fly    83 GGRTLRVDNACTE----KSRMEMQ-QLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYEL 142
            |||.:|.:.|..:    ||..|.. :.|:...|.|        :.:|:..|.....:......:|
  Rat   181 GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVN--------QSSPKNCTVYCGGIASGLTDQL 237

  Fly   143 MKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQG 207
            |:|     ..:|......:.:.|:..|:.      :|....:.|...:...|       |...:|
  Rat   238 MRQ-----TFSPFGQIMEIRVFPEKGYSF------VRFSTHESAAHAIVSVN-------GTTIEG 284

  Fly   208 PGNHTMMGQQQVPQ----QQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMDP 268
            .......|::....    |||...|..|.              :.|:.|               |
  Rat   285 HVVKCYWGKESPDMTKNFQQVDYSQWGQW--------------SQVYGN---------------P 320

  Fly   269 RMMGRGMDQDLRASLPNPVPPPLMDPRARAQMPP---------QQQQGVPQAPPAPYPSDPRQRP 324
            :..|:.|....                   |:||         ||..||.|:|.|.:......:|
  Rat   321 QQYGQYMANGW-------------------QVPPYGVYGQPWNQQGFGVDQSPSAAWMGGFGAQP 366

  Fly   325 MDPRLRAGPGPQQQAPPQGIPQAPPPTQ 352
                      ||.||||   |..|||.|
  Rat   367 ----------PQGQAPP---PVIPPPNQ 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 31/98 (32%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 25/73 (34%)
CSTF2_hinge 112..190 CDD:291025 11/77 (14%)
CSTF_C 377..416 CDD:291002
Tial1NP_001013211.1 RRM1_TIAR 10..107 CDD:410028
RRM2_TIAR 113..192 CDD:410029 26/75 (35%)
RRM3_TIAR 222..294 CDD:241064 13/89 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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