DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Snrnp35

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001014149.1 Gene:Snrnp35 / 360803 RGDID:1310724 Length:244 Species:Rattus norvegicus


Alignment Length:107 Identity:33/107 - (30%)
Similarity:55/107 - (51%) Gaps:8/107 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
            :|.....:.:....:.::||..:..:..||||||:||..|.:..|:||.|..:|..||:.|.|||
  Rat    36 LARYVPNKGVTGDPLLTLFVARLNSQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYK 100

  Fly    66 DQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQG 107
            ::...|.|.|:.:|..|....:.||        .|:::.|:|
  Rat   101 EERALLKAYRDADGLVIDQHEIFVD--------YELERTLRG 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 29/83 (35%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
Snrnp35NP_001014149.1 RRM_snRNP35 47..137 CDD:409683 32/96 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 146..244
Blue background indicates that the domain is not in the aligned region.

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