DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Msi2

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001417161.1 Gene:Msi2 / 360596 RGDID:1560397 Length:354 Species:Rattus norvegicus


Alignment Length:409 Identity:80/409 - (19%)
Similarity:127/409 - (31%) Gaps:147/409 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|:|.:.::.:.:.|::.||:.|.:....::.|..:.:.:||||..:.| ..::..:.....:|:
  Rat    23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD-PASVDKVLGQPHHEL 86

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKT----VASLPPEQMYELM 143
            ..:|:                   .|:|..|      ....|:::|:|    |..|....:.|.:
  Rat    87 DSKTI-------------------DPKVAFP------RRAQPKMVTRTKKIFVGGLSANTVVEDV 126

  Fly   144 KQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQGP 208
            ||                              ...:....:.|:.|..|..        |.|:|.
  Rat   127 KQ------------------------------YFEQFGKVEDAMLMFDKTT--------NRHRGF 153

  Fly   209 GNHTMMGQ-----------QQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGG 262
            |..|...:           .::..:.|:..:.|   |:..|..||....|.            |.
  Rat   154 GFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ---PKEVMFPPGTRGRAR------------GL 203

  Fly   263 PMPMDPRMMGRGMDQDLRASLPNPVPP-----PLMDPRARAQMP---PQQQQGVPQAPPAP---- 315
            |..||..|:|.||     ...||.|..     |...|....|.|   |......|.|...|    
  Rat   204 PYTMDAFMLGMGM-----LGYPNFVATYGRGYPGFAPSYGYQFPALLPYLNASFPAAAYGPVAAA 263

  Fly   316 ------------YPSDPR-QRPMDPRLRAGPGPQQQAPPQGIPQA----------PPPTQQQ--- 354
                        |.:.|. ..|..|   ||..|   |.|.|.|.|          .|.:|..   
  Rat   264 AVAAARGSVLNSYSAQPNFGAPTSP---AGSNP---ARPGGFPGANSPGPVADLYGPASQDSGVG 322

  Fly   355 ---QAAAQQLQSRLGAHGV 370
               .||:.|..|..| ||:
  Rat   323 NYISAASPQPGSGFG-HGI 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 14/75 (19%)
CSTF2_hinge 111..190 CDD:433869 10/82 (12%)
CSTF_C 377..416 CDD:464130
Msi2NP_001417161.1 None
Blue background indicates that the domain is not in the aligned region.

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