DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and rbm7

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_956219.1 Gene:rbm7 / 334784 ZFINID:ZDB-GENE-030131-6724 Length:252 Species:Danio rerio


Alignment Length:216 Identity:58/216 - (26%)
Similarity:89/216 - (41%) Gaps:31/216 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAM 74
            |.|::.|::||||:..:.|||.:.|:|.:.||::.:|:..:.| ||.|.|.|..:|.:.:...|:
Zfish     3 IADEADRTLFVGNLDPQVTEEVIFELFLQAGPLIKVKIPKNNE-GKSKLFAFVNFKHEVSVPYAL 66

  Fly    75 RNLNGYEIGGRTLRVDNACTEKSRMEMQ----QLLQGPQVENPYGEPCEPEDAPELITKTVASLP 135
            ..|||..:.||.|.: ...|..|.:..:    ...|.|...|..|.  .....||.:.....| |
Zfish    67 NLLNGIRLHGRQLNI-KFKTGSSHINQEGKSPANSQNPSPANTPGH--RGGRTPEQMGSPSYS-P 127

  Fly   136 PEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVL 200
            |:.|....        |:|...::..|:|......:.|.          |.|...|:.....|  
Zfish   128 PQHMQRPF--------SSPDTLQRQAMMNNMWQVQMQQL----------QMLSGTFQQGMQQP-- 172

  Fly   201 GGNPHQGPGNHTMMGQQQVPQ 221
            .||...|...|  .||:..||
Zfish   173 RGNADGGWSGH--RGQRHSPQ 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 29/83 (35%)
CSTF2_hinge 111..190 CDD:433869 15/78 (19%)
CSTF_C 377..416 CDD:464130
rbm7NP_956219.1 RRM_RBM7 8..82 CDD:410005 27/75 (36%)
PABP-1234 <11..195 CDD:130689 55/208 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 88..137 11/59 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..252 9/25 (36%)
PRK12678 <171..>248 CDD:237171 9/25 (36%)
Blue background indicates that the domain is not in the aligned region.

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