DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and rbm14a

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001108616.1 Gene:rbm14a / 323721 ZFINID:ZDB-GENE-050522-496 Length:471 Species:Danio rerio


Alignment Length:502 Identity:105/502 - (20%)
Similarity:151/502 - (30%) Gaps:211/502 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 DKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRN 76
            |.|...:||||:..|.|::.|..:|:..|.|:.:.::        :.|.|...:.:..|.||:|:
Zfish     3 DSSAVKLFVGNLDLETTQDDLIALFAPFGEVVHITVL--------RQFAFVHLQGEGAADSAIRD 59

  Fly    77 LNGYEIGGRTLRVD---------------NACTEKSRMEMQQLLQGPQVENPYGE--PCE----- 119
            |||.|..||:|.|:               |.|...|..::..|.      :|||:  .|:     
Zfish    60 LNGREYRGRSLVVEESKGRPLNSTKVFVGNLCASCSVEDLYDLF------SPYGKVLDCDKVKTK 118

  Fly   120 --------------PEDAPELI-----------------------TKTV---------------- 131
                          .|||.:.|                       |..|                
Zfish   119 PSSLTGYAFVYMEHKEDAEQAIEGLHGTTFMGRPLAVELSKVQQSTNKVPCASCGAHGHFAGECP 183

  Fly   132 ASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQ------------------------------ 166
            .:.||.:.:    |.:..:::..:.|...|.|..|                              
Zfish   184 INRPPMEHH----QSQAAVLAAAAAAAAGLPLQVQQSVHNSFYNTASSDPTFAALKDLTTSRVDG 244

  Fly   167 -----LAYALLQAMVVMRIVD------PQQALGMLFKANQMPPVLGGNPHQGPGNHTM------- 213
                 :.|..|.:.|...:.|      .|.|.|...:|...|.|..|..   |..||:       
Zfish   245 KPVSSMVYGALASQVYSSVADQVIGSTSQTAEGYPTEAEAPPGVAYGTE---PDPHTLFEAARAR 306

  Fly   214 ---MGQQQVPQQQVQIPQQQQQAP----QPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMDPRMM 271
               .|||.:.:||......:.::|    .|.:|.|.|...:...|....|...|.|         
Zfish   307 FFEQGQQVLAEQQAVTKSDRDRSPIRRTAPLLPDPSPQQFSQARPKRRALLPTPPG--------- 362

  Fly   272 GRGMDQDLRASLPNPVPPPLM--DPRARA-----------QMPPQQQQ---------GVPQAPPA 314
                         .|..||:.  ||.||.           |...|.||         ..|..||.
Zfish   363 -------------GPELPPVKNGDPIARCYAEYYQQYQQYQQYQQYQQYHQYHQYQYNYPPPPPP 414

  Fly   315 PYPSDPRQRPMDPRLRAGPGP----QQQAPPQGIP---QAPPPTQQQ 354
            |    |...||.|     |||    |..||...||   ..|.||.::
Zfish   415 P----PAPMPMMP-----PGPMDVQQMMAPGTSIPPRVYEPTPTHKE 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/96 (28%)
CSTF2_hinge 111..190 CDD:433869 24/179 (13%)
CSTF_C 377..416 CDD:464130
rbm14aNP_001108616.1 RRM_SF 7..75 CDD:473069 24/75 (32%)
RRM_SF 84..156 CDD:473069 12/77 (16%)
Blue background indicates that the domain is not in the aligned region.

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