DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and tia1l

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_956476.1 Gene:tia1l / 323447 ZFINID:ZDB-GENE-030131-2167 Length:342 Species:Danio rerio


Alignment Length:90 Identity:28/90 - (31%)
Similarity:54/90 - (60%) Gaps:3/90 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IMDKSM-RSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSA 73
            :||:.. |:::|||:..:.||..:.::||::||..|.|::.|.....|  :.|.|:.:...|.:|
Zfish     2 MMDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP--YCFVEFYENRHAAAA 64

  Fly    74 MRNLNGYEIGGRTLRVDNACTEKSR 98
            :..:||.:|.|:.::|:.|.|..|:
Zfish    65 LAAMNGRKILGKDMKVNWASTPSSQ 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 26/87 (30%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 22/73 (30%)
CSTF2_hinge 112..190 CDD:291025
CSTF_C 377..416 CDD:291002
tia1lNP_956476.1 ELAV_HUD_SF 7..272 CDD:273741 26/85 (31%)
RRM_SF 10..90 CDD:302621 25/82 (30%)
RRM2_TIA1 96..175 CDD:241062
RRM3_TIAR 206..278 CDD:241064
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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