DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and hnrnpa0l

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001268650.1 Gene:hnrnpa0l / 321899 ZFINID:ZDB-GENE-030131-618 Length:302 Species:Danio rerio


Alignment Length:88 Identity:27/88 - (30%)
Similarity:52/88 - (59%) Gaps:4/88 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNG 79
            ::.:|||.:..:..:|.|::.||:.||:...:::.|:::||.:||||..:.|.::|..|: .:..
Zfish    96 VKKIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAV-VMKF 159

  Fly    80 YEIGGRTLRVDNACTEKSRMEMQ 102
            :.|.|..:.|..|.|   :.|||
Zfish   160 HSICGHKVEVKKALT---KQEMQ 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/78 (29%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
hnrnpa0lNP_001268650.1 RRM1_hnRNPA0 4..82 CDD:409764
RRM_SF 98..177 CDD:473069 24/82 (29%)
Blue background indicates that the domain is not in the aligned region.

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