DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and srsf4

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_955868.1 Gene:srsf4 / 321872 ZFINID:ZDB-GENE-030131-591 Length:366 Species:Danio rerio


Alignment Length:82 Identity:23/82 - (28%)
Similarity:42/82 - (51%) Gaps:8/82 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNG 79
            |..|:||.:.|.|.|:.::..|...|.:|.:.|        ..|:||.|:.|...|..|:.:|||
Zfish     1 MSRVYVGKLSYRAREKDVERFFKGYGKILEVDL--------KNGYGFVEFDDPRDADDAVYDLNG 57

  Fly    80 YEIGGRTLRVDNACTEK 96
            .::.|:.:.|::...::
Zfish    58 KDLCGKRVIVEHTIGQR 74

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/78 (29%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
srsf4NP_955868.1 RRM_SF 1..81 CDD:473069 23/82 (28%)
RRM2_SRSF4 101..182 CDD:410157
Blue background indicates that the domain is not in the aligned region.

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