Protein Alignment CstF64 and Cstf2t

DIOPT Version :10

• Sequence 1: NP_477453.1
• Gene: CstF64 / 42239
• FlyBaseID: FBgn0027841
• Length: 419
• Species: Drosophila melanogaster
• Sequence 2: NP_001101056.1
• Gene: Cstf2t / 309338
• RGDID: 1310026
• Length: 629
• Species: Rattus norvegicus
• Alignment Length: 639
• Identity: 243/639 - (38%)
• Similarity: 302/639 - (47%)
• Gaps: 235/639 - (36%)

  Fly     1 MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
            |:..|.....||:|:|||||||||||||||:||:||||||.|:|.:||:|||:|||||:|||||:
  Rat     1 MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQ 65

  Fly    66 DQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQ---VENPYGEPCEPEDAPELI 127
            ||||||||||||||.|..||.||||||.:||::.|::.|  ||.   :::|||:|.:||||||.|
  Rat    66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSL--GPAAPIIDSPYGDPIDPEDAPESI 128

  Fly   128 TKTVASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFK 192
            |:.|||||||||:|||||||||:.::..|||.||:.|||||||||||.|||||:||:.||.:|.:
  Rat   129 TRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYALLQAQVVMRIMDPEIALKILHR 193

  Fly   193 ANQMPPVL------------------------GGNPHQG--PGNHTMMGQQQ-VPQQQ------- 223
            ...:.|::                        |..|..|  ||.:.|:.||. .||.|
  Rat   194 KIHVTPLIPGKSQPVSGPGPGGPGGPGGPGGPGPGPAPGLCPGPNVMLNQQNPAPQPQHLPRRPV 258

  Fly   224 VQIPQQQQ-------QAPQP-PMPVPGPGFPANVHPN-----DIDLRMVPGGPMPMDPRMMGRGM 275
            ..||...|       .||.| |..||||| |.::.|.     .:.:.:|  ||:|::     ||.
  Rat   259 KDIPPLMQTSIQGGIPAPGPIPAAVPGPG-PGSLTPGGTMQPQVGMPVV--GPVPLE-----RGQ 315

  Fly   276 DQ--DLRASLP-NPVP----PP--LM-----DPR------ARAQMPPQQQQGVP-QAPP------ 313
            .|  |.|..:| .|:|    ||  |:     |||      ...::.|:...|.| |.||
  Rat   316 MQISDPRPPMPRGPMPSGGIPPRGLLGDAPNDPRGGTLLSVTGEVEPRGYMGPPHQGPPMHHGHD 380

  Fly   314 -----------APYPSDPRQ------------------------------RPM-----DPR---- 328
                       .|..:|||.                              |||     :||
  Rat   381 NRGPASHDMRGGPLAADPRMLIGEPRGPMMDQRGLPMDGRGGRDSRGMEARPMETEVLEPRGMER 445

  Fly   329 -----------------------LRAGPGPQQQAP-----------------PQGIPQAP----- 348
                                   :| ||||..:.|                 |||..|.|
  Rat   446 RMETCAMETRGMEARGIDARGLEMR-GPGPSSRGPMTGGIQGPGPINMGAGGPQGPRQVPNIAGV 509

  Fly   349 --PPTQQQ---------------------------------------QAAAQQLQSRLGAHGVLP 372
              |....|                                       |.|..|..|:.||.  .|
  Rat   510 GNPGGAMQGAGIQGAGMQGAGMQGGGMQGAGMQGGGMQGAGMQGGGMQGAGMQGASKQGAG--QP 572

  Fly   373 SDAS---------DQEKAALIMQVLQLSDEQIAQLPSEQRVSIVMLKEQIAKST 417
            |..|         ||||||||||||||:.:|||.||.|||.||::|||||.|||
  Rat   573 SSFSPGQSQVTPQDQEKAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKST 626

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CstF64	NP_477453.1	RRM_CSTF2_CSTF2T	10..94	CDD:410072	66/83 (80%)
		CSTF2_hinge	111..190	CDD:433869	55/78 (71%)
		CSTF_C	377..416	CDD:464130	29/38 (76%)
Cstf2t	NP_001101056.1	RRM_CSTF2_CSTF2T	10..94	CDD:410072	66/83 (80%)
		CSTF2_hinge	112..191	CDD:433869	55/78 (71%)
		CSTF_C	585..625	CDD:464130	29/39 (74%)