DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Rbmx

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001020834.1 Gene:Rbmx / 302855 RGDID:1565256 Length:390 Species:Rattus norvegicus


Alignment Length:392 Identity:76/392 - (19%)
Similarity:120/392 - (30%) Gaps:156/392 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|:|.:..|..|:.|:.:|.:.|.::.:.|:.|||:.|.:||.|..::....|..|.|::||..:
  Rat    10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSL 74

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMKQMK 147
            .|:.::|:.|..             |..|:  |.               ..|||           
  Rat    75 DGKAIKVEQATK-------------PSFES--GR---------------RGLPP----------- 98

  Fly   148 LCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQAL-------GMLFKANQMPPVLGGNPH 205
                  |..:|                       .|.:.|       |    ..:.||..||  |
  Rat    99 ------PPRSR-----------------------GPPRGLRGGRGGSG----GTRGPPSRGG--H 128

  Fly   206 QGPGNHTM---MGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVHPNDIDLRMVPGGPMPMD 267
            ...|.::|   :...:.|     :|.::...|:...|.|              .|..|.||:...
  Rat   129 MDDGGYSMNFTLSSSRGP-----LPVKRGPPPRSGGPPP--------------KRSAPSGPVRSS 174

  Fly   268 PRMMGR---GMDQDLRASLPNPVPPP-----LMDPR---------ARAQMPPQQQQGVPQAPPA- 314
            ..|.||   ...:|.....|...|.|     .:.||         ..::..|..:.....|||. 
  Rat   175 SGMGGRAPVSRGRDGYGGPPRREPLPSRRDVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 239

  Fly   315 --------------PYPSD--------PRQRPMDPRLRAGP--------GPQQQAPPQGIPQAPP 349
                          .|||.        .|:|........|.        |..:.|||   .:.||
  Rat   240 DYTYRDYGHSSSRDDYPSRGYSDRDGYGRERDYSDHPSGGSYRDSYESYGNSRSAPP---TRGPP 301

  Fly   350 PT 351
            |:
  Rat   302 PS 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/75 (31%)
CSTF2_hinge 111..190 CDD:433869 10/85 (12%)
CSTF_C 377..416 CDD:464130
RbmxNP_001020834.1 RRM_RBMX_like 7..86 CDD:409816 23/75 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 58..390 61/344 (18%)
dnaA 165..>302 CDD:455861 27/139 (19%)
RBM1CTR 173..217 CDD:400429 9/43 (21%)
Blue background indicates that the domain is not in the aligned region.

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