Protein Alignment CstF64 and ctf1

DIOPT Version :10

• Sequence 1: NP_477453.1
• Gene: CstF64 / 42239
• FlyBaseID: FBgn0027841
• Length: 419
• Species: Drosophila melanogaster
• Sequence 2: NP_596669.1
• Gene: ctf1 / 2541018
• PomBaseID: SPBC3B9.11C
• Length: 363
• Species: Schizosaccharomyces pombe
• Alignment Length: 500
• Identity: 98/500 - (19%)
• Similarity: 153/500 - (30%)
• Gaps: 254/500 - (50%)

  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ||||||||:.:|:::.|||::||||.:.|||.|.|:|..||:||||:.|.||...|:|.||..|:
pombe     9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSEL 73

  Fly    83 GGRTLRVD--------------------------------------------------------- 90
            |.|.:||:
pombe    74 GPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVLHSTSSLPASQGGGMPS 138

  Fly    91 ---------------------------------------------NACT---EKSRMEMQQLLQG 107
                                                         ||.|   .||.........|
pombe   139 PAIYSSSMATNLNKNINSTSVPAYNFHNSMTSDFDSASQPHTDAYNARTFQYNKSSQNKGDYTSG 203

  Fly   108 PQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALL 172
            ..:.||...|..|.     :.:.:::...:::..::.:::..:...|.|||::|:.||.|.||..
pombe   204 TSISNPTSIPLAPS-----VVQVLSTFSAQELLNMLSKLQTVVHIAPEEARRLLIANPALPYAAF 263

  Fly   173 QAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPP 237
            |||::|.:||          ||.:                         |||.:..:.:
pombe   264 QAMLLMNLVD----------ANVL-------------------------QQVVVAVKNK------ 287

  Fly   238 MPVPGPGFPANVHPNDIDLRMVPGGPMPMDPRMMGRGMDQDLRASLPNPVPPPLMDPRARAQMPP 302
                      |:|                                          .|.:....||
pombe   288 ----------NMH------------------------------------------QPASATSSPP 300

  Fly   303 QQQQGVPQAPPAPYPSDPRQRPMDPRLRAGPGPQQQAPPQGIPQAPPPTQQQQAAAQQLQSRLGA 367
                                                :.||.||.:...:||...:.|
pombe   301 ------------------------------------SVPQKIPSSNHKSQQANGSDQ-------- 321

  Fly   368 HGVLPSDASDQEKAALIMQVLQLSDEQIAQLPSEQRVSIVMLKEQ 412
                   .::.::.|||.|:|.|:.|||..||..||..|:.::.|
pombe   322 -------GNEGKRMALIQQLLALTPEQINALPPAQRDQILSIRRQ 359

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CstF64	NP_477453.1	RRM_CSTF2_CSTF2T	10..94	CDD:410072	42/177 (24%)
		CSTF2_hinge	111..190	CDD:433869	20/78 (26%)
		CSTF_C	377..416	CDD:464130	14/35 (40%)
ctf1	NP_596669.1	PABP-1234	<6..248	CDD:130689	51/243 (21%)
		RRM_CSTF2_RNA15_like	7..82	CDD:409832	40/72 (56%)
		CSTF2_hinge	208..281	CDD:433869	24/112 (21%)
		CSTF_C	320..359	CDD:464130	15/53 (28%)