DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Rbmx2

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_775552.1 Gene:Rbmx2 / 209003 MGIID:1919414 Length:326 Species:Mus musculus


Alignment Length:129 Identity:47/129 - (36%)
Similarity:68/129 - (52%) Gaps:28/129 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|||.:|||.||..:..:||:.|.::::.||.|:::||.|||.|..|:||.:.:.|:.|.||.:|
Mouse    38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKI 102

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELI---------TKTVASLPPE 137
            .|||:|||:                  |.| |..|.|.||..::.         .||..|.|||
Mouse   103 KGRTIRVDH------------------VSN-YRAPQESEDVDDVTRELQEKGCGVKTPPSSPPE 147

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 34/75 (45%)
CSTF2_hinge 111..190 CDD:433869 12/36 (33%)
CSTF_C 377..416 CDD:464130
Rbmx2NP_775552.1 RRM_ist3_like 27..115 CDD:409845 36/95 (38%)
PHA03307 113..>284 CDD:223039 12/36 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 117..326 10/31 (32%)
U2AF_lg 259..>324 CDD:273727
Blue background indicates that the domain is not in the aligned region.

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