DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Snrnp70

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_033250.3 Gene:Snrnp70 / 20637 MGIID:98341 Length:448 Species:Mus musculus


Alignment Length:98 Identity:31/98 - (31%)
Similarity:55/98 - (56%) Gaps:3/98 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
            |.|...:.:....:.:::||..:.|:.||.||:..|...||:..:.:|:.:.||||:|:.|.||:
Mouse    88 MWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYE 152

  Fly    66 DQETALSAMRNLNGYEIGGRTLRVDNACTEKSR 98
            .:....||.::.:|.:|.||.:.||   .|:.|
Mouse   153 HERDMHSAYKHADGKKIDGRRVLVD---VERGR 182

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/83 (33%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
Snrnp70NP_033250.3 U1snRNP70_N 3..94 CDD:432406 2/5 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..79
Required for interaction with U1 RNA. /evidence=ECO:0000250|UniProtKB:P08621 92..202 29/94 (31%)
RRM_snRNP70 102..187 CDD:409682 29/84 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 187..439
Blue background indicates that the domain is not in the aligned region.

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