DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Srsf5

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001334344.1 Gene:Srsf5 / 20384 MGIID:98287 Length:270 Species:Mus musculus


Alignment Length:75 Identity:20/75 - (26%)
Similarity:37/75 - (49%) Gaps:8/75 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ||:|.:...|.|:.::..|...|.:..:.|        .:||||.|::|...|..|:..|:|.|:
Mouse     6 VFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAVYELDGKEL 62

  Fly    83 GGRTLRVDNA 92
            ....:.:::|
Mouse    63 CSERVTIEHA 72

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 20/75 (27%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 19/73 (26%)
CSTF2_hinge 112..190 CDD:291025
CSTF_C 377..416 CDD:291002
Srsf5NP_001334344.1 RRM1_SRSF5 5..74 CDD:410008 20/75 (27%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 73..105 20/75 (27%)
RRM2_SRSF5 99..179 CDD:410158
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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