Sequence 1: | NP_477453.1 | Gene: | CstF64 / 42239 | FlyBaseID: | FBgn0027841 | Length: | 419 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001359585.1 | Gene: | rnp-9 / 182350 | WormBaseID: | WBGene00007396 | Length: | 312 | Species: | Caenorhabditis elegans |
Alignment Length: | 216 | Identity: | 51/216 - (23%) |
---|---|---|---|
Similarity: | 89/216 - (41%) | Gaps: | 52/216 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
Fly 83 GGRTLRVD-----NACTEKSRMEMQQLLQGPQVEN----------------------PYGEPCEP 120
Fly 121 EDAPELITKTVASLPPEQMYELMK-QMKLCIVSNPSEARQMLMLNPQL--AYALLQAMVVMRIVD 182
Fly 183 PQQALGML---FKANQMPPVL 200 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CstF64 | NP_477453.1 | RRM | <13..>112 | CDD:223796 | 27/98 (28%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 25/78 (32%) | ||
CSTF2_hinge | 112..190 | CDD:291025 | 20/102 (20%) | ||
CSTF_C | 377..416 | CDD:291002 | |||
rnp-9 | NP_001359585.1 | RRM2_TIA1_like | 88..162 | CDD:240799 | 25/72 (35%) |
RRM3_TIA1_like | 189..260 | CDD:240800 | 13/82 (16%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |