DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and Ncl

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_035010.3 Gene:Ncl / 17975 MGIID:97286 Length:707 Species:Mus musculus


Alignment Length:149 Identity:40/149 - (26%)
Similarity:64/149 - (42%) Gaps:35/149 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DKAQEQSIMDKS------MRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGF 61
            :|.|.|....|:      .:::.:.|:.|.||:|.|:|:|.:.    :...|.....|||||:.|
Mouse   468 EKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKA----TFIKVPQNPHGKPKGYAF 528

  Fly    62 CEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPEL 126
            .|:...|.|..|:.:.|..||.|||:|::              |||   .|...:|.:       
Mouse   529 IEFASFEDAKEALNSCNKMEIEGRTIRLE--------------LQG---SNSRSQPSK------- 569

  Fly   127 ITKTVASLPPEQMYELMKQ 145
             |..|..|..:...|.:|:
Mouse   570 -TLFVKGLSEDTTEETLKE 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 27/89 (30%)
CSTF2_hinge 111..190 CDD:433869 7/35 (20%)
CSTF_C 377..416 CDD:464130
NclNP_035010.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..308
PRK13808 <12..142 CDD:172341
8 X 8 AA tandem repeats of X-T-P-X-K-K-X-X 58..135
RRM1_NCL 309..383 CDD:409837
RRM2_NCL 392..467 CDD:409838
RRM3_NCL 486..558 CDD:409839 26/89 (29%)
RRM4_NCL 569..646 CDD:409840 5/27 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 639..707
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.