DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and Msi1

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_032655.1 Gene:Msi1 / 17690 MGIID:107376 Length:362 Species:Mus musculus


Alignment Length:418 Identity:76/418 - (18%)
Similarity:121/418 - (28%) Gaps:160/418 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            :|:|.:.::.|:|.|:|.|.:.|.|....::.|..:.:.:||||..:.||               
Mouse    22 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ--------------- 71

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKT----VASLPPEQMYELM 143
                ..||....: ||.|:......|:|..|      ....|:::|:|    |..|......|.:
Mouse    72 ----AGVDKVLAQ-SRHELDSKTIDPKVAFP------RRAQPKMVTRTKKIFVGGLSVNTTVEDV 125

  Fly   144 KQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVLGGNPHQGP 208
            |.                              ...:......|:.|..|..        |.|:|.
Mouse   126 KH------------------------------YFEQFGKVDDAMLMFDKTT--------NRHRGF 152

  Fly   209 G---------------------NHTMMGQQQVPQQQVQIPQQQQQAPQPPMP------------V 240
            |                     |:.|:..::...::|..|....:.....||            :
Mouse   153 GFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGML 217

  Fly   241 PGPGFPANVHPNDIDLRMVPG------------GPMPMDPRMMGRGMDQDLRASLPNPVPPPLMD 293
            ..|||.|..:.:.....:.||            .|:|..|.:      .:|.|     :|.....
Mouse   218 GYPGFQATTYASRSYTGLAPGYTYQFPEFRVERSPLPSAPVL------PELTA-----IPLTAYG 271

  Fly   294 PRARAQMPPQQQQGVPQAPPAPYPSDPRQRPMDPRLRAGPGPQQQAPPQG-IPQ---------AP 348
            |.|.|.......:|                       .|..|...|||.| .|.         :|
Mouse   272 PMAAAAAAAAVVRG-----------------------TGSHPWTMAPPPGSTPSRTGGFLGTTSP 313

  Fly   349 PPTQQQQAAAQQ---LQSRLGAHGVLPS 373
            .|..:...||.|   :.|.:.|....||
Mouse   314 GPMAELYGAANQDSGVSSYISAASPAPS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 18/75 (24%)
CSTF2_hinge 111..190 CDD:433869 9/82 (11%)
CSTF_C 377..416 CDD:464130
Msi1NP_032655.1 RRM1_MSI 21..96 CDD:409990 23/93 (25%)
PABP-1234 <32..312 CDD:130689 65/377 (17%)
RRM2_MSI 110..183 CDD:240769 13/110 (12%)
Blue background indicates that the domain is not in the aligned region.

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