DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and eif-3.G

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001263666.1 Gene:eif-3.G / 174346 WormBaseID:WBGene00001230 Length:262 Species:Caenorhabditis elegans


Alignment Length:103 Identity:29/103 - (28%)
Similarity:52/103 - (50%) Gaps:14/103 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ADKAQEQSIMDKSMR--------------SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRE 52
            |||..|:..|...||              :..|.|:|.|..|::|:::|.::|.|:.:.:..|:.
 Worm   154 ADKDTEKDRMAMGMRPDGRQIDRNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKV 218

  Fly    53 SGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVD 90
            :|.||||.|..::.::.|..|:..||...:....|:|:
 Worm   219 TGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLKVE 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 25/95 (26%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
eif-3.GNP_001263666.1 eIF3G 33..143 CDD:240597
RRM_eIF3G_like 183..257 CDD:409842 22/74 (30%)
Blue background indicates that the domain is not in the aligned region.

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