DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and CSTF2

DIOPT Version :9

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001293135.1 Gene:CSTF2 / 1478 HGNCID:2484 Length:597 Species:Homo sapiens


Alignment Length:605 Identity:240/605 - (39%)
Similarity:292/605 - (48%) Gaps:199/605 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
            ||........:|:|:|||||||||||||||:||:||||||||:|.:||:|||:|||||:|||||:
Human     1 MAGLTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 65

  Fly    66 DQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQG-PQVENPYGEPCEPEDAPELITK 129
            ||||||||||||||.|..||.||||||.:||::.|::.|..| |.:|:||||...||||||.|:|
Human    66 DQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPVIESPYGETISPEDAPESISK 130

  Fly   130 TVASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKAN 194
            .|||||||||:|||||||||:.::|.|||.||:.|||||||||||.||||||||:.||.:|.:..
Human   131 AVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALLQAQVVMRIVDPEIALKILHRQT 195

  Fly   195 QMPPVLGGNPH------QGPGNHTMMGQQ--QVPQQQ---------------------VQIPQQQ 230
            .:|.::.|||.      .|.|::..|.||  |.||.|                     |..|.|.
Human   196 NIPTLIAGNPQPVHGAGPGSGSNVSMNQQNPQAPQAQSLGGMHVNGAPPLMQASMQGGVPAPGQM 260

  Fly   231 QQAPQPPMP--------------VPGPGFPANVHPNDIDLRMVPGGP----------MPM-DPR- 269
            ..|...|.|              :||.| |.::......|:..|.||          :|| ||| 
Human   261 PAAVTGPGPGSLAPGGGMQAQVGMPGSG-PVSMERGQGTLQHSPVGPAGPASIERVQVPMQDPRA 324

  Fly   270 MMGRGMDQDLRASLPNPVPPP--LM-----DPRARAQM--------------------------- 300
            .|.||       |||..||.|  |:     |||....:                           
Human   325 AMQRG-------SLPANVPTPRGLLGDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHVPGH 382

  Fly   301 -----PPQQQQGVPQAPPAPYPSDPR-----QR--PMDPR------------------------- 328
                 ||.:.:|.|...|.|..::||     ||  |:|.|                         
Human   383 ESRGPPPHELRGGPLPEPRPLMAEPRGPMLDQRGPPLDGRGGRDPRGIDARGMEARAMEARGLDA 447

  Fly   329 ------------------------LRA--------------GPGPQQQAP-PQGIPQAPPPTQQ- 353
                                    .||              ||.|..:.| |.|: |.|.|... 
Human   448 RGLEARAMEARAMEARAMEARAMEARAMEVRGMEARGMDTRGPVPGPRGPIPSGM-QGPSPINMG 511

  Fly   354 -----------------QQAAAQQLQSRLGAHGVLPSD----ASDQEKAALIMQVLQLSDEQIAQ 397
                             .|.|:.|..|:.|  |..|..    ..|.||||||||||||:.:|||.
Human   512 AVVPQGSRQVPVMQGTGMQGASIQGGSQPG--GFSPGQNQVTPQDHEKAALIMQVLQLTADQIAM 574

  Fly   398 LPSEQRVSIVMLKEQIAKST 417
            ||.|||.||::|||||.|||
Human   575 LPPEQRQSILILKEQIQKST 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM <13..>112 CDD:223796 71/99 (72%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 60/73 (82%)
CSTF2_hinge 112..190 CDD:291025 57/77 (74%)
CSTF_C 377..416 CDD:291002 28/38 (74%)
CSTF2NP_001293135.1 PABP-1234 4..352 CDD:130689 176/355 (50%)
RRM_CSTF2_CSTF2T 18..92 CDD:241115 60/73 (82%)
CSTF2_hinge 112..191 CDD:373015 58/78 (74%)
PRK14718 <412..>469 CDD:173181 5/56 (9%)
CSTF_C 553..593 CDD:373006 28/39 (72%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165148528
Domainoid 1 1.000 125 1.000 Domainoid score I5489
eggNOG 1 0.900 - - E1_COG0724
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 306 1.000 Inparanoid score I2642
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1455080at2759
OrthoFinder 1 1.000 - - FOG0001914
OrthoInspector 1 1.000 - - otm40688
orthoMCL 1 0.900 - - OOG6_100265
Panther 1 1.100 - - LDO PTHR45735
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2262
SonicParanoid 1 1.000 - - X1629
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1413.790

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