Sequence 1: | NP_477453.1 | Gene: | CstF64 / 42239 | FlyBaseID: | FBgn0027841 | Length: | 419 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001293135.1 | Gene: | CSTF2 / 1478 | HGNCID: | 2484 | Length: | 597 | Species: | Homo sapiens |
Alignment Length: | 605 | Identity: | 240/605 - (39%) |
---|---|---|---|
Similarity: | 292/605 - (48%) | Gaps: | 199/605 - (32%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYK 65
Fly 66 DQETALSAMRNLNGYEIGGRTLRVDNACTEKSRMEMQQLLQG-PQVENPYGEPCEPEDAPELITK 129
Fly 130 TVASLPPEQMYELMKQMKLCIVSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKAN 194
Fly 195 QMPPVLGGNPH------QGPGNHTMMGQQ--QVPQQQ---------------------VQIPQQQ 230
Fly 231 QQAPQPPMP--------------VPGPGFPANVHPNDIDLRMVPGGP----------MPM-DPR- 269
Fly 270 MMGRGMDQDLRASLPNPVPPP--LM-----DPRARAQM--------------------------- 300
Fly 301 -----PPQQQQGVPQAPPAPYPSDPR-----QR--PMDPR------------------------- 328
Fly 329 ------------------------LRA--------------GPGPQQQAP-PQGIPQAPPPTQQ- 353
Fly 354 -----------------QQAAAQQLQSRLGAHGVLPSD----ASDQEKAALIMQVLQLSDEQIAQ 397
Fly 398 LPSEQRVSIVMLKEQIAKST 417 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CstF64 | NP_477453.1 | RRM | <13..>112 | CDD:223796 | 71/99 (72%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 60/73 (82%) | ||
CSTF2_hinge | 112..190 | CDD:291025 | 57/77 (74%) | ||
CSTF_C | 377..416 | CDD:291002 | 28/38 (74%) | ||
CSTF2 | NP_001293135.1 | PABP-1234 | 4..352 | CDD:130689 | 176/355 (50%) |
RRM_CSTF2_CSTF2T | 18..92 | CDD:241115 | 60/73 (82%) | ||
CSTF2_hinge | 112..191 | CDD:373015 | 58/78 (74%) | ||
PRK14718 | <412..>469 | CDD:173181 | 5/56 (9%) | ||
CSTF_C | 553..593 | CDD:373006 | 28/39 (72%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C165148528 | |
Domainoid | 1 | 1.000 | 125 | 1.000 | Domainoid score | I5489 |
eggNOG | 1 | 0.900 | - | - | E1_COG0724 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 306 | 1.000 | Inparanoid score | I2642 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1455080at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001914 | |
OrthoInspector | 1 | 1.000 | - | - | otm40688 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100265 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR45735 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2262 |
SonicParanoid | 1 | 1.000 | - | - | X1629 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
14 | 13.790 |