DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and SRSF12

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_542781.3 Gene:SRSF12 / 135295 HGNCID:21220 Length:261 Species:Homo sapiens


Alignment Length:111 Identity:28/111 - (25%)
Similarity:50/111 - (45%) Gaps:18/111 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYE 81
            |:|:.|:......|.|:..|...||::.:.:..|..:.:|:||.:.:::|...|..|:.|||...
Human    11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKW 75

  Fly    82 IGGRTLRVDNACTEKSRMEMQQLLQGP-----QVENPYGEPCEPED 122
            :.||.:.:             |..||.     |:::....||.|.|
Human    76 VCGRQIEI-------------QFAQGDRKTPGQMKSKERHPCSPSD 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 20/76 (26%)
CSTF2_hinge 111..190 CDD:433869 4/12 (33%)
CSTF_C 377..416 CDD:464130
SRSF12NP_542781.3 RRM_SRSF10_SRSF12 10..93 CDD:240758 23/94 (24%)
PABP-1234 <12..211 CDD:130689 27/110 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 86..261 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.

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