DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CstF64 and Srsf9

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_079849.1 Gene:Srsf9 / 108014 MGIID:104896 Length:222 Species:Mus musculus


Alignment Length:127 Identity:34/127 - (26%)
Similarity:58/127 - (45%) Gaps:14/127 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNLNGYEI 82
            ::|||:|.:..|:.|:::|.:.|.:..::|. :|....|  |.|..::|...|..|:...|||:.
Mouse    17 IYVGNLPSDVREKDLEDLFYKYGRIREIELK-NRHGLVP--FAFVRFEDPRDAEDAIYGRNGYDY 78

  Fly    83 GGRTLRVDNACTEKSRMEMQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMK 144
            |...|||:...|...|....:..:.       |.|....|...|    |:.|||...::.:|
Mouse    79 GQCRLRVEFPRTYGGRGGWPRGARN-------GPPTRRSDFRVL----VSGLPPSGSWQDLK 129

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/75 (31%)
CSTF2_hinge 111..190 CDD:433869 9/34 (26%)
CSTF_C 377..416 CDD:464130
Srsf9NP_079849.1 RRM1_SRSF9 16..87 CDD:241042 23/72 (32%)
RRM2_SRSF9 104..187 CDD:410161 9/30 (30%)
Interaction with SAFB1. /evidence=ECO:0000250 189..201
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 190..222
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.