DRSC/TRiP Functional Genomics Resources

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Protein Alignment CstF64 and srsf4

DIOPT Version :10

Sequence 1:NP_477453.1 Gene:CstF64 / 42239 FlyBaseID:FBgn0027841 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_004911639.2 Gene:srsf4 / 100038227 XenbaseID:XB-GENE-493077 Length:741 Species:Xenopus tropicalis


Alignment Length:83 Identity:23/83 - (27%)
Similarity:42/83 - (50%) Gaps:9/83 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 MDKSMR-SVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAM 74
            |.:||. .|::|.:.:.|.|..::..|...|.::.:.|        ..|:||.|::|...|..|:
 Frog     1 MSRSMMPRVYIGRLSHRARERDVERFFKGFGKIVEVDL--------KNGYGFVEFEDSRDAEDAV 57

  Fly    75 RNLNGYEIGGRTLRVDNA 92
            ..:||.|:.|..:.|::|
 Frog    58 YEMNGRELCGERVIVEHA 75

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CstF64NP_477453.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 23/83 (28%)
CSTF2_hinge 111..190 CDD:433869
CSTF_C 377..416 CDD:464130
srsf4XP_004911639.2 RRM_SF 6..77 CDD:473069 20/78 (26%)
RRM_SF 104..176 CDD:473069
PTZ00121 <248..716 CDD:173412
PRK12678 255..>469 CDD:237171
Blue background indicates that the domain is not in the aligned region.

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