DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG31224 and CTCF

DIOPT Version :10

Sequence 1:NP_732361.1 Gene:CG31224 / 42237 FlyBaseID:FBgn0051224 Length:1784 Species:Drosophila melanogaster
Sequence 2:NP_648109.1 Gene:CTCF / 38817 FlyBaseID:FBgn0035769 Length:818 Species:Drosophila melanogaster


Alignment Length:662 Identity:145/662 - (21%)
Similarity:242/662 - (36%) Gaps:162/662 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1139 AKGEISEQESNCDIENS-WSESVYGDISQRYFRNQFSGGYHPDWRQDYYPAQDLSAQLREHKRFD 1202
            |.|....:|:..|:::: .:|....|...:||.:.....|   .:......::|..:|::.....
  Fly    55 AGGSKPMEEAEADLDHAEEAEEEEEDDEDKYFIDDEGNCY---IKTTPKKQKELQKKLKQAAAKP 116

  Fly  1203 FNAVDDEASSSSRRSHLTDLPTAATSSACTSSAMLAGPPIASTSRAAAEAAAEAAALAQRKPQRR 1267
            ..|.....|:::.:| :...|..:|..|.||..  ...|.|.:.|.|..|||:|...|...|   
  Fly   117 GKATRSVVSTATNKS-INLRPAKSTPKATTSKP--PPEPKAISVRPARAAAAKAKQSAMPPP--- 175

  Fly  1268 KLYKCPHCEAIFEKLKERNAHMIGEHNYVRQNRRLICTQPQINTSMLTLQQQMIVQSGEVEDSKD 1332
                    .|:..|:.....         |..:..:..:|:    .:.|::::            
  Fly   176 --------PALVVKVPAPRG---------RPRKNPVIPKPE----PMDLEREL------------ 207

  Fly  1333 GIVKIKQEQCQEKQDVEQMHDHSELLADVKDSELMGIGGDGDGDVDDDIKPPNQLDEKPTLPPLA 1397
                   |:..::.|:      |.::.::.|                     ..:||.......|
  Fly   208 -------EELVDEPDI------SSMVTELSD---------------------YTVDEAAVEAATA 238

  Fly  1398 MTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDF----PSVKLYDAH 1458
            ..||              ||:::.:..:|.:..::.|.:|.:        ||    ..|||..|.
  Fly   239 TLTP--------------NEAEVYEFEDNATTEDENADKKDV--------DFVLSNKEVKLKTAS 281

  Fly  1459 LTE-------HPAEC----FTCGKKFYRWKNFSLHLKRHLGWKEFGCYVCDKKFVVRSALVEHMR 1512
            .|.       |...|    :|..|||.    .:.|.:.|.....|.|.:|::.|.....|..|:.
  Fly   282 STSQNSNASGHKYSCPHCPYTASKKFL----ITRHSRSHDVEPSFKCSICERSFRSNVGLQNHIN 342

  Fly  1513 MHTGQTPLKCKICGKKFKRYSNLTQH-RKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDLK 1576
            .|.|..|.|||:|...|.....|.:| |.:|||.                              |
  Fly   343 THMGNKPHKCKLCESAFTTSGELVRHTRYKHTKE------------------------------K 377

  Fly  1577 PKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMC----KQIFAKTSIKAHMATHSTEPQ 1637
            |..|..|....|....||||: ..|:.:    .|.:||.|    :.:|   .:|.||..|:.|.:
  Fly   378 PHKCTECTYASVELTKLRRHM-TCHTGE----RPYQCPHCTYASQDMF---KLKRHMVIHTGEKK 434

  Fly  1638 YDCAICSKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHI-NAHKQIKPYTCEYC 1701
            |.|.||...|:...:||.|..:|:......|:|.|||....|:.|.:.|| :.|....|.||..|
  Fly   435 YQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCNYCPTTCGRKADLRVHIKHMHTSDVPMTCRRC 499

  Fly  1702 GCKFIRKYNYMRHRREHHGTKKFTCDQCDKSFHRHYYLIEHRRMHTGERPFTCTICGKSSTTKTN 1766
            |.:...:|.|..|.:.|.|.|.::|..|..:.....:|..|..:|..|:||.|..|.::...:..
  Fly   500 GQQLPDRYQYKLHVKSHEGEKCYSCKLCSYASVTQRHLASHMLIHLDEKPFHCDQCPQAFRQRQL 564

  Fly  1767 HNKHLKIHHSRD 1778
            ..:|:.:.|:.:
  Fly   565 LRRHMNLVHNEE 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG31224NP_732361.1 C2H2 Zn finger 1466..1486 CDD:275368 6/23 (26%)
C2H2 Zn finger 1494..1514 CDD:275368 5/19 (26%)
zf-H2C2_2 1506..1531 CDD:463886 10/24 (42%)
C2H2 Zn finger 1522..1542 CDD:275368 7/20 (35%)
PHA00733 1527..1623 CDD:177301 22/100 (22%)
C2H2 Zn finger 1554..1573 CDD:275370 0/18 (0%)
C2H2 Zn finger 1580..1599 CDD:275368 7/18 (39%)
C2H2 Zn finger 1613..1632 CDD:275368 7/22 (32%)
COG5048 <1637..1780 CDD:227381 42/143 (29%)
C2H2 Zn finger 1640..1660 CDD:275368 7/19 (37%)
C2H2 Zn finger 1670..1690 CDD:275368 8/20 (40%)
C2H2 Zn finger 1698..1718 CDD:275368 6/19 (32%)
zf-H2C2_2 1710..1733 CDD:463886 7/22 (32%)
C2H2 Zn finger 1726..1746 CDD:275368 4/19 (21%)
C2H2 Zn finger 1754..1774 CDD:275368 3/19 (16%)
CTCFNP_648109.1 FAP 116..>202 CDD:429334 22/112 (20%)
C2H2 Zn finger 296..316 CDD:275368 6/23 (26%)
COG5048 321..>621 CDD:227381 82/294 (28%)
C2H2 Zn finger 324..344 CDD:275368 5/19 (26%)
C2H2 Zn finger 352..373 CDD:275368 7/20 (35%)
C2H2 Zn finger 381..401 CDD:275368 7/20 (35%)
zf-H2C2_2 394..415 CDD:463886 9/25 (36%)
C2H2 Zn finger 409..429 CDD:275368 7/22 (32%)
zf-H2C2_2 422..446 CDD:463886 10/23 (43%)
C2H2 Zn finger 437..457 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..485 CDD:275368 7/17 (41%)
C2H2 Zn finger 496..516 CDD:275370 6/19 (32%)
C2H2 Zn finger 524..544 CDD:275368 4/19 (21%)
zf-H2C2_2 536..561 CDD:463886 8/24 (33%)
C2H2 Zn finger 552..573 CDD:275368 3/20 (15%)
zf-C2H2 587..609 CDD:395048
C2H2 Zn finger 589..609 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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