DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qin and Snd1

DIOPT Version :10

Sequence 1:NP_650735.3 Gene:qin / 42236 FlyBaseID:FBgn0263974 Length:1857 Species:Drosophila melanogaster
Sequence 2:NP_073185.2 Gene:Snd1 / 64635 RGDID:631340 Length:909 Species:Rattus norvegicus


Alignment Length:856 Identity:167/856 - (19%)
Similarity:302/856 - (35%) Gaps:260/856 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1169 NINKALLMAGMAEKDHNSDSEDDQQSMPENVSVNSEEAAKAND---WESCLSKIDGTSKTNDSLN 1230
            ||.::|:..|:|.:.....:.:.:|    |.....||.|||:.   |    |:.:|:....|...
  Rat   121 NIAESLVAEGLASRREGMRANNPEQ----NRLSECEEQAKASKKGMW----SEGNGSHTIRDLKY 177

  Fly  1231 LIESRSVTVGFEHNEDMPPLALLEDLGN---------------TKNTTGETTPPAGWTTRRKCDK 1280
            .||:....|...|.:  |..|::|.:.:               |...:|...|    |.||:.|.
  Rat   178 TIENPRHFVDSHHQK--PVNAIIEHVRDGSVVRALLLPDHYLVTVMLSGIKCP----TFRRETDG 236

  Fly  1281 S----VFTAIATNVTYECCIYLTLASDKPFIEHMGNLLVREYKPLMDKQKERS------------ 1329
            |    .|.|.|                |.|.|  ..||.|:.:.:::....::            
  Rat   237 SETPEPFAAEA----------------KFFTE--SRLLQRDVQIILESCHNQNILGTILHPNGNI 283

  Fly  1330 TSYTYKVGQAVVVTYHMDNMIYRGIVQRL--------ENNHNEYTVYYVDYGNMELVKADEMLPY 1386
            |....|.|.|..|.:.:  .:|....::|        |.....:..|.....|::  :.|:....
  Rat   284 TELLLKEGFARCVDWSI--AVYTRGAEKLRAAERFAKERRLRIWRDYVPPTANLD--QKDKQFVA 344

  Fly  1387 APFPDLNAMCFLVELHGVRSKQGKYSLKEMDTVHLNLVM--KLSGVRIVD--------------- 1434
            .....|||...:|:|:     .|.|.     |:||:.:.  :|.|..|.|               
  Rat   345 KVMQVLNADAIVVKLN-----SGDYK-----TIHLSSIRPPRLEGDNIQDKNKKLRPLYDIPYMF 399

  Fly  1435 ----------------------------DETVGPNKIPKC-QIKVGNVDIATMMIDSGMSVPIE- 1469
                                        .|||.......| .:.:|.::||..::..|::..|. 
  Rat   400 EAREFLRKKLIGKKVSVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRY 464

  Fly  1470 KQTIKNNTKYLPSQKFLEDFKVFDELDHLAA-------GEGELSDKEAPPTQRKHDSISSVQQPP 1527
            :|.....:.:            :|||  |||       |:|..|.||. |..|..|.....|:  
  Rat   465 RQDDDQRSSH------------YDEL--LAAEARAIKNGKGLHSKKEV-PIHRVADISGDTQK-- 512

  Fly  1528 TKKFLVDQEEVEAFECDQDFDCQQAAQKMHLNNNFYLGDFGKYADETT--ARD------EDEPHS 1584
            .|:||...:.....|...::....:..|::|.....|..|.....|..  ||:      |.||.|
  Rat   513 AKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFS 577

  Fly  1585 NSS----------KSIDMEV---------------------------------FANVNDSQLEPL 1606
            ..:          :.:::||                                 |.....:..:||
  Rat   578 EEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLSVLLVEHALSKVHFTAERSAYYKPL 642

  Fly  1607 NSFATEQLIRRIALRQQEIKDSITFSPI-DTSSVRSFYDASASFKTLSLPNGVKEFYCTVDNVLS 1670
              .:.|:..::   |::::.......|: :...|....:.|||:|.:.:.....:.:..|.:|.:
  Rat   643 --LSAEEAAKQ---RKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVET 702

  Fly  1671 DTELQIAPCLSEFTKHEISLIQETSTLIKDAEPLME----PKVGDLCLARYSRDKQWYRANIKEI 1731
            .|:|:   .|.|..:.:||           :.|.:|    |:.|:.|:|::. |.:||||.::::
  Rat   703 GTQLE---KLMENMRSDIS-----------SHPPVEGAYAPRRGEFCIAKFV-DGEWYRARVEKV 752

  Fly  1732 SPILSPTSEQVTVFYIDFHDTEKVSFNHL---------KVMPSQLFMFPLRSFCVKLHGIKRNKS 1787
            .   ||.  :|.|||||:.:.|.:....|         :|:|:|...:......|......|..:
  Rat   753 E---SPA--KVHVFYIDYGNREILPSTRLGALPPAFSTRVLPAQATEYAFAFIQVPQDEDARTDA 812

  Fly  1788 FKEKSVRQALQACLC----QHPLVFARVHYPLNYYPNRPNCDADLIE--VELYENRHEKKLVYQS 1846
            .  .||.:.:|...|    :| |..:..|..|.:..::.:....|::  :.:.|.|.||:  :|.
  Rat   813 V--DSVVRDIQNTQCLLNVEH-LSASCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQ--FQK 872

  Fly  1847 LCENWMFLKKS 1857
            :...::..::|
  Rat   873 VITEYLNAQES 883

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qinNP_650735.3 zf-RING_5 25..76 CDD:434085
Bbox1 140..178 CDD:380815
Bbox2 208..244 CDD:380814
TUDOR 536..648 CDD:425754
TUDOR 742..859 CDD:425754
Tudor_SF 989..1139 CDD:470623
TUDOR 1296..1403 CDD:425754 22/126 (17%)
TUDOR <1703..1781 CDD:425754 25/90 (28%)
Snd1NP_073185.2 SNc 20..165 CDD:214615 13/51 (25%)
SNc 192..327 CDD:214615 28/160 (18%)
Nuclear localization signal. /evidence=ECO:0000255 320..324 0/3 (0%)
SNc 349..495 CDD:238102 32/169 (19%)
Nuclear localization signal. /evidence=ECO:0000255 387..391 0/3 (0%)
SNc 524..659 CDD:214615 19/139 (14%)
Tudor_TDRD11 702..784 CDD:410504 27/101 (27%)
SNc <843..894 CDD:469627 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.

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