DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qin and Snd1

DIOPT Version :9

Sequence 1:NP_650735.3 Gene:qin / 42236 FlyBaseID:FBgn0263974 Length:1857 Species:Drosophila melanogaster
Sequence 2:NP_062750.2 Gene:Snd1 / 56463 MGIID:1929266 Length:910 Species:Mus musculus


Alignment Length:1165 Identity:215/1165 - (18%)
Similarity:393/1165 - (33%) Gaps:416/1165 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   781 RINISQLQNIFLGQLHLGCVLQSGGQWKRASIEQILPDGYVLVHLVDEGPSQKVFWDQLFVLP-Q 844
            :||:|.              :::|...:||:..|  |||       .:.|      |:.:..| :
Mouse    48 QINLSN--------------IRAGNLARRAAATQ--PDG-------KDTP------DEPWAFPAR 83

  Fly   845 KFWDTGLAIKCCLADVETRAEHSYTWTPEGTTLFKQLTSNPRLYMDVISCTEDLVYVSLHFERSN 909
            :|....|..|.....:|.:       ||:|           |.|        .::|:.   :.:|
Mouse    84 EFLRKKLIGKEVCFTIENK-------TPQG-----------REY--------GMIYLG---KDTN 119

  Fly   910 SETTSVGVQLVAHGHCTSSGESSRMITPTVSNRSVRFDEETKKFIAQQKVRPVELSPYRMPDNTE 974
            .|  ::...|||.|..|.. |..|...|. .||....:|:.|   |.:|..           .:|
Mouse   120 GE--NIAESLVAEGLATRR-EGMRANNPE-QNRLSECEEQAK---ASKKGM-----------WSE 166

  Fly   975 RNKRTTVNIL--YVRKPDEFYVTLPHFQKAINNLQKSVQKAAAAMYQNMLPRTDWQVGDMCYARV 1037
            .|...|:..|  .:..|..|..:  |.||.:|.:.:.|:..:..                     
Mouse   167 GNGSHTIRDLKYTIENPRHFVDS--HHQKPVNAIIEHVRDGSVV--------------------- 208

  Fly  1038 QANCDSQALWYRG--VVTGVIPPGITCPIVRYQVH---------------------LRDLGELID 1079
                  :||...|  :|| |:..||.||..|.:..                     .||:..:::
Mouse   209 ------RALLLPGHHLVT-VMLSGIKCPTFRRETDGSETPEPFAAEAKFFTESRLLQRDVQIILE 266

  Fly  1080 DVHSSSL--------ANIDEADMRISSSAKRCHLHGIRPIGDEWSKDAIDFFMDQLKAYNEIHVT 1136
            ..|:.:|        .||.|  :.:.....||         .:||........::|:|.......
Mouse   267 SCHNQNLLGTILHPNGNITE--LLLKEGFARC---------VDWSIAVYTRGAEKLRAAERFAKE 320

  Fly  1137 GRGRTENSLSVILWGSLSILTGPFSPATIKYVNINKALLMAGMAEKDHNSDSEDDQQSMPENVSV 1201
            .|.|        :|..       :.|.|            |.:.:|        |:|.:.:.:.|
Mouse   321 RRLR--------IWRD-------YVPPT------------ANLDQK--------DKQFVAKVMQV 350

  Fly  1202 NSEEA--AKAN--DWESC-LSKIDGTSKTNDSLNLIESRSVTVGFEHNEDMPPL----ALLED-- 1255
            .:.:|  .|.|  |:::. ||.|.......|::.           :.|:.:.||    .:.|.  
Mouse   351 LNADAIVVKLNSGDYKTIHLSSIRPPRLEGDNIQ-----------DKNKKLRPLYDIPYMFEARE 404

  Fly  1256 ------LGNTKNTTGETTPPAGWTTRRKCDKSVFTAIATNVTYECCIYLTLASDKPFIEHMGNLL 1314
                  :|...|.|.:...||          |..|......:...|..:|:          |.:.
Mouse   405 FLRKKLIGKKVNVTVDYIRPA----------SPATETVPAFSERTCATVTI----------GGIN 449

  Fly  1315 VREYKPLMDKQKERSTSYTYKVGQAVVVTYHMDNMIYRGIVQRLENNHNEYTVYYVDYGNMELVK 1379
            :.|  .|:.|            |.|.|:.|..|:              ::.:.:|          
Mouse   450 IAE--ALVSK------------GLATVIRYRQDD--------------DQRSSHY---------- 476

  Fly  1380 ADEMLPYAPFPDLNAMCFLVELHGVRSKQGKYSLKEMDTVHLNLVMKLSGVRIVDDETVGPNKIP 1444
             ||:|             ..|...:::.:|.:|.||   |.::.|..:||     |.......:|
Mouse   477 -DELL-------------AAEARAIKNGKGLHSKKE---VPIHRVADISG-----DTQKAKQFLP 519

  Fly  1445 KCQIKVGNVDIATMMIDSGMSVPIEKQTIKNNTKYLPSQKFLEDFKVFDELDHLAAG-EGELSDK 1508
            ..| :.|..:.....:.||..:.:          |||.:..|..|        |.|| |.....:
Mouse   520 FLQ-RAGRSEAVVEYVFSGSRLKL----------YLPKETCLITF--------LLAGIECPRGAR 565

  Fly  1509 EAPPTQRKHDSISSVQQPPTKKFLVDQE---EVEAFECDQDFD--------------CQQAAQKM 1556
            ..|...::.:..|......||:.::.:|   |||:.:...:|.              .:||..|:
Mouse   566 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHMDGANLSVLLVEQALSKV 630

  Fly  1557 HLNNNFYLGDFGKYADETTARDEDEPHSNSSKSIDMEVFANVNDSQLEPLNSFATEQLIRRIALR 1621
            |     :..:...|.....:.:|      ::|....:|:|:..:..:|.:.....|:        
Mouse   631 H-----FTAERSAYYKPLLSAEE------AAKQRKEKVWAHYEERPVEEVMPVLEEK-------- 676

  Fly  1622 QQEIKDSITFSPIDTSSVRSFYDASASFKTLSLPNGVKEFYCTVDNVLSDTELQIAPCLSEFTKH 1686
                                  :.|||:|.:.:.....:.:..|.:|.:.|:|:   .|.|..::
Mouse   677 ----------------------ERSASYKPVFVTEITDDLHFYVQDVETGTQLE---KLMENMRN 716

  Fly  1687 EISLIQETSTLIKDAEPLME----PKVGDLCLARYSRDKQWYRANIKEISPILSPTSEQVTVFYI 1747
            :||           :.|.:|    |:.|:.|:|::. |.:||||.::::.   ||.  :|.||||
Mouse   717 DIS-----------SHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVE---SPA--KVHVFYI 764

  Fly  1748 DFHDTEKVSFNHL---------KVMPSQLFMFPLRSFCVKLHGIKRNKSFKEKSVRQALQACLC- 1802
            |:.:.|.:....|         :|:|:|...:......|......|..:.  .||.:.:|...| 
Mouse   765 DYGNREILPSTRLGTLPPAFSTRVLPAQATEYAFAFIQVPQDEDARTDAV--DSVVRDIQNTQCL 827

  Fly  1803 ---QHPLVFARVHYPLNYYPNRPNCDADLIE--VELYENRHEKKLVYQSLCENWMFLKKS 1857
               :| |..:..|..|.:..::.:....|::  :.:.|.|.||:  :|.:...::..::|
Mouse   828 LNVEH-LSASCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQ--FQKVITEYLNAQES 884

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qinNP_650735.3 zf-RING_5 25..75 CDD:291308
BBOX 139..174 CDD:197662
TUDOR 536..648 CDD:278965
TUDOR 741..859 CDD:278965 16/78 (21%)
TUDOR <805..839 CDD:119391 8/33 (24%)
TUDOR 981..1107 CDD:278965 28/158 (18%)
TUDOR 1296..1403 CDD:278965 15/106 (14%)
TUDOR 1337..1385 CDD:119391 8/47 (17%)
TUDOR 1710..1761 CDD:119391 18/59 (31%)
Snd1NP_062750.2 SNc 21..166 CDD:214615 39/193 (20%)
SNc 26..166 CDD:238102 39/193 (20%)
SNc 193..328 CDD:214615 30/181 (17%)
SNc 201..328 CDD:238102 28/173 (16%)
Nuclear localization signal. /evidence=ECO:0000255 321..325 2/11 (18%)
SNc 341..495 CDD:214615 38/236 (16%)
SNc 350..496 CDD:238102 37/228 (16%)
Nuclear localization signal. /evidence=ECO:0000255 388..392 0/3 (0%)
SNc 525..660 CDD:214615 29/163 (18%)
SNc 533..660 CDD:238102 28/155 (18%)
TUDOR 677..799 CDD:278965 36/141 (26%)
TUDOR 728..784 CDD:197660 19/61 (31%)
SNc <844..895 CDD:294094 7/43 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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