DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qin and rnf17

DIOPT Version :9

Sequence 1:NP_650735.3 Gene:qin / 42236 FlyBaseID:FBgn0263974 Length:1857 Species:Drosophila melanogaster
Sequence 2:XP_021334643.1 Gene:rnf17 / 334519 ZFINID:ZDB-GENE-030131-6451 Length:1521 Species:Danio rerio


Alignment Length:1860 Identity:360/1860 - (19%)
Similarity:632/1860 - (33%) Gaps:545/1860 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   139 VKCSECGNATASGECRQ---------CNAFYCRRCFDAVHKRSRVLKSHIFRNST---------- 184
            |.|..||:.....|...         |...:|..|..|:..:..|:.....:..|          
Zfish     6 VTCKICGSPYTLPEDEAVGNLPHVLLCGHIFCCTCLRALQSQGNVITCPECQMDTRTSEEGVDGL 70

  Fly   185 EQDSSF----------SKKLRVGD----QYFTLPSQNLCIHHRMPKDKYCMKCYRSHCQICSTVH 235
            |.||..          :||...||    |.|..|..:..:|                      ..
Zfish    71 EVDSRIIGLIYTARMNTKKGHSGDKWKSQKFKSPPSSAAVH----------------------TE 113

  Fly   236 HSGHRIRKLIEINQSYASEIPTTLNSLNMAHIHVLNG----------------KQVVQRAKQ--- 281
            .:......::::.....::....||.|:..|..:.||                .:.|::||.   
Zfish   114 ENAEGKPDVVKVLDEALTKATENLNQLDKLHQTLANGVHGQLRKERSRIIREIDEAVEKAKSILL 178

  Fly   282 KLNDYATETLASISKRFSHLHGLLQVAELQVIEKLRESSLPPQLKLNEAMGQLSGYETV--IERL 344
            |.......||:|:...||  .|.::...::  |:::|  |...::....:.|:...||.  :|::
Zfish   179 KRRSMLVSTLSSVDLLFS--GGQMECKRIE--ERIKE--LRTAIQKARHVRQVPSLETYCDLEKI 237

  Fly   345 TKSLNSGVGNDMAVPRDV------SLRWLLKLICEHL------EKIPTTVQVSKVDEN--PYRVT 395
            .::|:        :|.|:      ||.....|.| ||      |.:...::::..|:|  ...:|
Zfish   238 LETLH--------IPVDLESYDMSSLTLRSGLSC-HLQVDGFTESVKVFLKITDTDDNCIVEEIT 293

  Fly   396 CSRFMDISNIFKCEFVNPNIQVCFKTDLEISRSLSSSPKGEITFLTSSSSSKENFDPHSRKLLLA 460
            ...|..:                .|:.:|:..:.|.|.:|:...:...|::...|          
Zfish   294 VEPFQHV----------------VKSGVEMWDNSSQSVQGKADAIPRKSNNTRRF---------- 332

  Fly   461 QNSKLKKATQVSQSQKKRGKNATEVAQSSLNSTAAIIDEFPAKDLDFLHNFS-SLDITKRNKTTE 524
                         .:|.......|:|.:.:|  |.:....|..:...:..:: .....:|.:..:
Zfish   333 -------------MEKMMEDTCPEIADTRVN--AGLGRNLPVHEPRRMERYNKGYRKQRRPQFEK 382

  Fly   525 DSSDWFKTDTLVRVRSVQSPEDFYVQGI---HAAQRLREELDTFA------HTLSDSSSVPPTIV 580
            .::...|....|....:.:|..|||:.:   ...|:|.:::..|.      .|.||.      |.
Zfish   383 PTNPQPKLVQYVVTTHIVNPGHFYVRYMAEHKLGQKLTKKISEFCSGERSFFTFSDE------IT 441

  Fly   581 VGQNYIIHHKDKDRYYRALVSQKLTNENLYN-------------VFLTDI--------------- 617
            .|....|..|| |.:.|..|::....|...:             |:..|.               
Zfish   442 TGSLLFISWKD-DMWCRVKVTELFQKECFQSVTKCLASEVSRLCVYFLDYGFFKGFSIPSDGGLS 505

  Fly   618 GVHLHVRCSDFRVVPERISHLPYSAVHCSLSELMPKNGESEWDSKASAFLKQIVQNNPVRVIV-- 680
            |::..:|..|...:.|..:..|. |:.|||.:::|.:....|.|:||..::.:::|....:.|  
Zfish   506 GLNECLRRPDGITLIEMANWAPL-AIKCSLKDIIPADLVKGWSSEASEEMRNVLRNETAEMQVFG 569

  Fly   681 --KKALTYELHGVDLITSNYDTNISVRDSFLYCGLA------ISRDGAPLWLPPAPTALRLPRIS 737
              ..||..:|....:.....::.:|:|:..::..||      |:...|||...|:..    |.::
Zfish   570 EDGDALLVDLKKTSMADLKKNSMVSLREHLVFMELARFYCPVITTGSAPLLFYPSVQ----PSLN 630

  Fly   738 FRFGDVYMVQMLHVEDPQEFYVMRHDYEKKRLWLQFSLQEAMDRINISQLQNIFLGQLHLGCVLQ 802
            ....    ..:.||..|.:|||...:..:..| |...||:..::...:....::...|...||..
Zfish   631 VEVN----AMVSHVNTPSDFYVQLVENTEYPL-LHSKLQDCYNQPKSNNECQVYCPSLSQACVAF 690

  Fly   803 SGGQWKRASIEQILPDGYVLVHLVDEGPSQKV-------FWDQLFVLPQKFWDTGLAIKCCLADV 860
            ...:|.|..:........|.|..||.|..:.:       ..|:.||||:      :|:.|.|.||
Zfish   691 HDQEWSRVQVTGFPGGRMVEVRFVDFGYKRTLSVKDLRHIKDEFFVLPE------MALWCNLNDV 749

  Fly   861 ETRAEHSYTWTPEGTTLFKQLTSNPRLYMDVIS----CTEDLVYVSLHFERSNSET-TSVGVQLV 920
            .:..|   ||..|....||:|....  .|.|::    .:...|.|.| ||.|:..| .|:|.:||
Zfish   750 ISSQE---TWANEACESFKELVEGK--LMTVVAKKNVPSSKPVPVCL-FEISDDCTGASIGDELV 808

  Fly   921 AHGHCTSSGESS-RMITP-TVSNRSVRFDEETKKFIAQQKVRPVELSP-YRMPDNTERNKRTTVN 982
            ..|:...:.::. |...| ..::....|:||....:........||.| ..:|...   |...|.
Zfish   809 KKGYAVYNKDTQVRDAQPLETTSWDPPFEEEALPVVMTPSSASEELKPSLSLPSCL---KDIRVR 870

  Fly   983 ILYVRKPDEFYVTLPHFQKAINNLQKSVQKAAAAMYQNMLPR-TDWQVGDMCYARVQANCDSQAL 1046
            :.:|..|....|.|..|    :|..|.:......::....|: ..|:      |.:....::..:
Zfish   871 VTHVTSPGNICVQLLQF----DNQLKRIHDTLKNLFSKSEPQEMQWE------AEMYCAVNNTGV 925

  Fly  1047 WYRGVVTGVIPPGITCPIVRYQVHLRDLGELIDDVHSSSLANIDEADMRISSSAKRCHLHGIRPI 1111
            |.||.|..|    .||.:.  :|...|.|..: .:|..:|..: ..|: |.|....|:|.|:||.
Zfish   926 WERGQVCSV----STCGVA--EVLRCDFGNTV-KLHVDNLRPL-HPDL-IGSFLLECNLSGVRPA 981

  Fly  1112 G--DEWSKDAIDFFMDQLKAYNEIHVTGRGRTENSLSVILWGSLSILT--GPFS-PATIKYVNIN 1171
            |  ..|:..|.||                      :|..|.|:::::.  .|.: |..:.....|
Zfish   982 GGRSTWTATACDF----------------------ISHYLTGAMALMAIKEPSTRPVLVSLFCSN 1024

  Fly  1172 KA---------LLMAGMAEKDHNSDSEDDQQSMPENVSVNSEEAAKANDWESCLSKIDGTSKTND 1227
            :|         |:..|:|.|:..::            .|.|||:....:.:..:|........:.
Zfish  1025 RAGQNVSFADFLISEGLALKERKAE------------MVFSEESVLVTEPQPVISPTQTPPTPSR 1077

  Fly  1228 SLNLIESRSVTVGFEHNEDMPPLALLEDLGNTKNTTGETTPPAGWTTRRKCDKSVFTAIATNVTY 1292
            .:|....|..|..:      ||..|               ||.|                     
Zfish  1078 RINPPPERVKTHSY------PPPEL---------------PPCG--------------------- 1100

  Fly  1293 ECCIYLTLASDKPFIEHMGNLLVREYKPLMDKQKE------RSTSYTYK--VGQAVVVTYHMDNM 1349
            ...:.::..|::..|..|.:..|.|:..|.::.::      |..:|.:|  :|.||:.|   |..
Zfish  1101 HILMSISAVSEQGVIYAMTHQAVCEFDRLRERLQQHIKTLPRQKNYNWKGVLGCAVMGT---DMF 1162

  Fly  1350 IYRGIVQRLENNHNEYTVYYVDYGNMELVKADEMLPYAPFPDLNAMCFLVELHGVR--SKQGKYS 1412
            .|||.||.:...|  ..|.|||.|.:|.:....:.|.....|:..:|...:::||.  .|..::.
Zfish  1163 WYRGQVQEVIGGH--VKVRYVDQGLVESIPVCHVYPMVLCEDVPQLCVPCQINGVLPIGKGWQWD 1225

  Fly  1413 ----LKEMDTVHLNLVMKLSGVRIVDDETVGPNKIPKCQIKVGNVDIATMMIDSGMSVPIEKQTI 1473
                :||:      |:.:...|:|::.        ||.......|:|   |:| ||::       
Zfish  1226 AVVLMKEL------LLGRSVNVQIMEH--------PKDPCGCVTVEI---MVD-GMAL------- 1265

  Fly  1474 KNNTKYLPSQKFL--EDFKVFDELDHLAAGEGELSDKEAPPTQRKHDSISSVQQPPTKKFLVDQE 1536
                     .|.:  ..:..||                 |....:.|   .|.:||....     
Zfish  1266 ---------SKIMVHHQYATFD-----------------PAISSQED---YVVKPPMPDL----- 1296

  Fly  1537 EVEAFECDQDFDCQQAAQKMHLNNNFYLGDFGKYADETTARDEDEPHSNSSKSIDMEVFANVNDS 1601
                    .|:|         ||              |...:|..|.....|.:.:.        
Zfish  1297 --------DDWD---------LN--------------TEGLEEQPPVLGVYKELHIP-------- 1322

  Fly  1602 QLEPLNSFATEQLIRRIALRQQEIKDSITFSPIDTSSVRSFYDASASFKTLSLPNGVKEFYCTVD 1666
                                    |:...|              .|..|.:..||.|  |.|.:|
Zfish  1323 ------------------------KERKHF--------------PAKVKHIRTPNEV--FLCVLD 1347

  Fly  1667 NVLSDTELQIAPCLSEFTKHEISLIQETSTLIKDAEPLMEPKVGDLCLARYSRDKQWYRANI--- 1728
            ..|         |..|..:.....:::.:..|::...|.:..:..||||.|| |.::|||.|   
Zfish  1348 KSL---------CKLEQDESMEETLEQVNENIENLSLLTDFPIECLCLAEYS-DGKYYRAKILGF 1402

  Fly  1729 KEISPILSPTSEQVTVFYIDFHDTEKVSFNHLKVMPSQLFMFPLRSFCVKLHGIKRNKSFKEKSV 1793
            .|::|     |.::.|.::||...:.:..:.|:.:|:.|..||..:..|||.|      ||..:|
Zfish  1403 SEVTP-----SVKLLVRHVDFGSDDIIPLHKLRQLPASLHHFPCAAVYVKLAG------FKPTNV 1456

  Fly  1794 RQALQACLCQHPLVFARVHYPLNYYPNRPNCDADLIEVEL 1833
            ...|:           |:.|.|::.........||:..||
Zfish  1457 SSDLE-----------RIPYSLDWTMKAMMEMIDLLNGEL 1485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qinNP_650735.3 zf-RING_5 25..75 CDD:291308
BBOX 139..174 CDD:197662 9/43 (21%)
TUDOR 536..648 CDD:278965 30/148 (20%)
TUDOR 741..859 CDD:278965 28/124 (23%)
TUDOR <805..839 CDD:119391 8/40 (20%)
TUDOR 981..1107 CDD:278965 28/126 (22%)
TUDOR 1296..1403 CDD:278965 29/114 (25%)
TUDOR 1337..1385 CDD:119391 17/47 (36%)
TUDOR 1710..1761 CDD:119391 17/53 (32%)
rnf17XP_021334643.1 RING_Ubox 8..60 CDD:327409 9/51 (18%)
TUDOR 394..534 CDD:306940 29/147 (20%)
TUDOR 633..746 CDD:306940 27/123 (22%)
TUDOR 865..977 CDD:306940 29/130 (22%)
TUDOR 1092..1214 CDD:306940 35/162 (22%)
TUDOR 1326..1450 CDD:306940 39/154 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 133 1.000 Inparanoid score I4574
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D117171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25033
orthoMCL 1 0.900 - - OOG6_110200
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R17338
SonicParanoid 1 1.000 - - X7549
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.800

Return to query results.
Submit another query.