DRSC/TRiP Functional Genomics Resources

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Protein Alignment qin and Rnf17

DIOPT Version :9

Sequence 1:NP_650735.3 Gene:qin / 42236 FlyBaseID:FBgn0263974 Length:1857 Species:Drosophila melanogaster
Sequence 2:XP_038949233.1 Gene:Rnf17 / 305908 RGDID:1310486 Length:1650 Species:Rattus norvegicus


Alignment Length:2077 Identity:413/2077 - (19%)
Similarity:706/2077 - (33%) Gaps:715/2077 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 RCPKCSKCFTYLYNTNSEEDNHRPFLLGCGHTLCESCLWNDRLDP------KCAVC--------- 74
            :|.:|.:      ..:....:|..:  .|||..||.||    |.|      ||..|         
  Rat    29 QCTRCGR------KASFASGHHHEY--PCGHAFCELCL----LAPQEYTTSKCTDCEVRTTVTMN 81

  Fly    75 --HSPA-------------PPTIVAKRSDCKS-VANLRDLYELNYHVLGRTSSLSYLLPFAKDSA 123
              |.|.             ||.:|   ::|.| :....|...:|   |..:||:.      ::.:
  Rat    82 QGHYPVDGFIKEDSSVEALPPKMV---NNCSSGLEKTVDQLIIN---LEHSSSIH------RNVS 134

  Fly   124 NQSLSPSSISEIVQTVKCSECGNATASGECRQCNAFYCRRCFDAVHKRSRVLKSHIFRNSTEQDS 188
            :.|...|...||.:.:|.:.|.:...|      ||.             ::|.|  .::.|.|::
  Rat   135 SPSAVMSETEEIDEALKIAGCNSEQLS------NAI-------------KMLDS--TQDQTRQET 178

  Fly   189 SFSKKLRVGDQYFTL------PSQNLCIHHRMPKDKYCMKCYRSHCQICSTVHHSGHRIRKLIEI 247
            ...::: |..|:.||      ..::||                                .:|:..
  Rat   179 GSLREV-VEKQFDTLIASLDSRKKSLC--------------------------------EELVRR 210

  Fly   248 NQSYASEIPTTLNSLNMAHIHVLNGKQVVQRAKQKLNDYATETLASISKRFSHLHGLLQVAEL-Q 311
            ...|.|::.|.              |..::..|..|     :....|:|.......|....:| |
  Rat   211 TDDYLSKLVTV--------------KSYIEEKKSDL-----DAAMKIAKELKSAPSLRTYCDLTQ 256

  Fly   312 VIEKLRESSLPPQLKLNEAMGQLSGYETVIERLTKSLNSGVGNDMAVPRDVSLRWLLKLICEHLE 376
            :|.         .||||        :|:.:.:::.          .:||                
  Rat   257 IIR---------TLKLN--------FESELSQVSS----------IIPR---------------- 278

  Fly   377 KIPTTVQVSKVDENPYR--VTCSRFMDISN-IFKCEF------------VNPNIQVCFKTDLEIS 426
                         ||.|  :.||..:.:.| :.|.||            |..|:|..|.:..|:.
  Rat   279 -------------NPPRLNINCSEVICMFNSMGKIEFEDSTKCHPQENEVGQNVQKKFNSKKELC 330

  Fly   427 RSLSSS--PKGEITFLTSSSS-----SKENFDPHSRKLLLAQNSKLKKATQVSQSQKKRGKNATE 484
            ..:.||  .|...|.:.:..:     ..|..|.|    |..:|.:.:|...|..|.|      |.
  Rat   331 CDVYSSLEKKRVDTVVLADEAPVPPLQAETPDRH----LEGENKQPQKEVLVVASPK------TV 385

  Fly   485 VAQSSLNSTA-AIIDEFPAKDLDFLHNFSSLDITK------RNKTTEDSSDWFKTDTLVRVRSVQ 542
            .....|.|:. .||:|...::|:.......::..:      :.:.:...:.......||.|..|.
  Rat   386 AVLPQLGSSPDVIIEEIIEENLESCFTDEPIETPRYPKKPPQKELSAPVASKAGCPELVFVSHVT 450

  Fly   543 SPEDFYVQ---GIHAAQRLREELDTFAHTLSDSSSVPP--TIVVGQNYIIHHKDKDRYYRALVSQ 602
            .|..|||:   .|..|..|.:::   ....|.|..:.|  |:.:|....::......:.|.::::
  Rat   451 HPCHFYVRKYSQIKDAAMLEKKM---KQVCSKSLHLDPSDTLELGARIFVNSIKNRMWCRGIITE 512

  Fly   603 KLTNE------------------NLYNVFLTDIG------------VHL--------HVRCSDFR 629
            .:..:                  :|..:|:.|.|            .|:        |:..|||.
  Rat   513 IIPTKTKNVRKPCSPTKFSVCEISLIQIFMVDFGNSEVLIITGVGDTHVGPEHVGEQHITLSDFC 577

  Fly   630 VV--------PERISHLPYSAVHCSLSELMPKNGESEWDSKASA-FLKQIVQNNPVRVIVKKALT 685
            ::        .|.:..:|:.|..|||.:::|.|....|:.:|.. |||         ::.|||:.
  Rat   578 LLVRKSEPYSEELLKDIPHLAHLCSLKDIVPYNSSEGWEKEAKVEFLK---------MVNKKAVL 633

  Fly   686 YELHG-------VDL-------ITSNYDTNISVRDSFLYCGLAISR----------DGAPLWLPP 726
            .::.|       |||       |:|  |..:|:||:.::..||..|          :.|..:.||
  Rat   634 MKVFGEEDDILIVDLQKPPTNKISS--DMPVSLRDALVFMELARFRSQSLRSHGENNTALCYRPP 696

  Fly   727 APTALRLPRISFRFGDVYMVQMLHVEDPQEFYVMRHDYEKKRLWLQFSLQEAMDRIN-ISQLQNI 790
            |     ||.   ...:| .|.:.|:..|.:||:              .|.|.:|.:: :..::..
  Rat   697 A-----LPE---EMTEV-SVMVCHINSPTDFYL--------------QLMENLDFLSLLKTIEEF 738

  Fly   791 FLGQ----LHLGCVLQS--------GGQWKRASIEQILPDGYVLVHLVDEGPSQKV-------FW 836
            :.|:    |.:.|.||:        .|.|.||.:..:.....|.|..||.|.:.|:       ..
  Rat   739 YKGEDGENLEILCPLQNQACVAKFEDGIWYRAKVIGLPGHREVEVKYVDFGNTAKITLKDMRKIK 803

  Fly   837 DQLFVLPQKFWDTGLAIKCCLADVE-TRAEHSYTWTPEGTTLFKQLTSNPRLYMDVISCTED-LV 899
            |:....|:|      ||||.||.:| ::..|   |:.:....|::.|.:..:...||...|: ::
  Rat   804 DEFLEPPEK------AIKCKLAFIEPSKRSH---WSKKAKEKFEEKTQDKFVTCSVIKILENGVL 859

  Fly   900 YVSLHFERS-NSETTSVGVQLVAHGHCTSSGESSRMITPTVSNRSVRFDEETKKFIAQQKVRPVE 963
            .|.|...|: .:...|:..|||..|  .:|.|:...:..........:|...::.|:.:......
  Rat   860 LVELFDSRAPGTSAVSINEQLVKEG--LASYEAGYTLKDNSKKHLEVWDPSPEEIISSEINSLSP 922

  Fly   964 LSPYRMPDNTER---NKRTTVNILYVRKPDEFYVTLPHFQKAINNLQKSVQKAAAAMYQNMLPRT 1025
            ||...:.:.:.:   ||...|:|..|..|::.||.....:..:.:|:   :|..||...:.....
  Rat   923 LSVNSLANESFQSLYNKELPVSICNVLSPEKIYVQWLLTENLLTSLE---EKMVAAYEHSEWKPV 984

  Fly  1026 DWQVGDMCYARVQANCDSQALWYRGVVTGVIPPGITCPIVRYQVHLRDLG-ELIDDVHSSSLANI 1089
            .|:....|..::.|    ::.|.||.:..::...:.      :|.|.|:| ||:.::|  .|..:
  Rat   985 KWECDMHCAVKIPA----KSQWRRGQIIRMVTDTLV------EVLLYDVGIELVVNIH--CLREL 1037

  Fly  1090 DEADMRISSSAKRCHLHGIRPIG--DEWSKDAIDFFMDQLKAYNEIHVTGRGRT----ENSLSVI 1148
            .|....:...:..|.|..|||.|  |:|:..|.|..        .:::||...|    |||.:  
  Rat  1038 QENLKTMGRLSLECSLVDIRPTGGSDKWTATACDCL--------SLYLTGAIATIILQENSTT-- 1092

  Fly  1149 LWGSLSILTGPFSPATIKY---------VNINKALLMAGMAEKDHNSDSEDDQQSMPENVSVNSE 1204
             |           |..:|.         |:::|.|:..|:|.:|.......:..|..:::.:..|
  Rat  1093 -W-----------PLPVKIFCRDEKGERVDVSKYLIKKGLALRDRRVSKSSNSHSPEKSLEIPLE 1145

  Fly  1205 EAAKANDWESCLSK-----IDGTSKTNDSLNLIESRSVTVGFEHNEDMPPLALLEDLGNTKNTTG 1264
            :.      :|.::|     .|...|..|.:|           ||.  :|.   .::..:...|.|
  Rat  1146 QG------DSVVTKCFQINFDTNKKIADKVN-----------EHK--VPE---SKEKYSESRTNG 1188

  Fly  1265 ETTPPAGWTTRRKCDKSVFTAIATNVTYECCIYLTLASDKPFIEHMGNLLVREYKPLMDKQKER- 1328
            ...|||...|      |.|.||.:      ||     .|...|..:..|...|...:||:.:.. 
  Rat  1189 FYKPPAVPNT------SSFEAIVS------CI-----GDDGTIFVVPKLSEFELIKMMDEIQSNL 1236

  Fly  1329 -----STSYTYKVGQAVVVTYHMDNMIYRGIVQRLENNHNEYTVYYVDYGNMELVKADEMLPYAP 1388
                 ...|.:|.|:...|. ..|.:.|||.|  :|.......|.|:|:|..|.:....:.|...
  Rat  1237 KCLGLLEPYFWKKGEPCAVR-GSDTLWYRGKV--MEVVGGTIRVQYLDHGFTEKIPQCHLYPILL 1298

  Fly  1389 FPDLNAMCFLVELH----------------------GVRSKQGKYSLKEMDTVHLNLVMKLSGVR 1431
            :||....|...:|:                      .:...|...|.:|:| :|   :|:|    
  Rat  1299 YPDTPQFCIPCQLYQTLPCVCVCVHYTQVGNVWQPDAIELLQELLSKREVD-IH---IMEL---- 1355

  Fly  1432 IVDDETVGPNKIPKCQIKVGNVDIATMMIDSGMS----VPIEKQTIKNNTKYLPSQKFL------ 1486
              .|...|              .::..:...|||    :...|..|..:|:.:..:|..      
  Rat  1356 --PDHPWG--------------KLSVHLYFDGMSLSYFMAYHKYCIFEHTEEIFKEKPRGQNKKY 1404

  Fly  1487 --EDFKV-FDELDHLAAGEGELSDKEAP--PTQRKHDSISSVQQPPTKKFLVDQEEV----EAFE 1542
              |::|: |::|        .|.:.|||  |..     :||:..||.:.:.|..:.:    |.:.
  Rat  1405 EDENWKIRFEDL--------LLPEMEAPILPPY-----LSSLLPPPEELYAVQVKHIVSPDEVYI 1456

  Fly  1543 C-DQDFDCQQAAQKMHLNNNFYLGDFGKYADETTARDEDEPHSNSSKSIDMEVFANVNDSQLEPL 1606
            | |....|.|      |||         :.|...:....||.|.|.:.....:  |.|.....||
  Rat  1457 CLDSVESCTQ------LNN---------HGDTDDSGVSWEPESESLEEALQRL--NKNVETFPPL 1504

  Fly  1607 NSFATEQLIRRIALRQQEIKDSITFSPIDTSSVRSFYDASASFKTLSLPNGVKEFYCTVDNVLSD 1671
            ..|::|.                                                          
  Rat  1505 TDFSSEM---------------------------------------------------------- 1511

  Fly  1672 TELQIAPCLSEFTKHEISLIQETSTLIKDAEPLMEPKVGDLCLARYSRDKQWYRA---NIKEISP 1733
                  |||:|:.                                   |..||||   :|||.:|
  Rat  1512 ------PCLAEYA-----------------------------------DGLWYRAKIVSIKEFNP 1535

  Fly  1734 ILSPTSEQVTVFYIDFHDTEKVSFNHLKVMPSQLFMFPLRSFCVKLHGIKRNKSFKEKS-----V 1793
            :      .|.|.::|:..|||::.|.|:.:|.||..:|.::..|.|.|.|...|...|:     .
  Rat  1536 L------SVLVLFVDYGSTEKLTINRLRQIPIQLMQYPAQAIKVLLAGFKPPLSDSGKTRIPYCP 1594

  Fly  1794 RQALQA------CLCQHPLVFARVHYPLNYYPNRPNCDADLIEVELYENRHEKKLVYQSLCE 1849
            |.:::|      ||....|..:.|            ..|....|.|||:  |:..|:.||.|
  Rat  1595 RWSMEALWTMIDCLQGKQLYASSV------------AQAPEQIVTLYED--EQYPVHMSLVE 1642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qinNP_650735.3 zf-RING_5 25..75 CDD:291308 15/66 (23%)
BBOX 139..174 CDD:197662 5/34 (15%)
TUDOR 536..648 CDD:278965 30/162 (19%)
TUDOR 741..859 CDD:278965 32/137 (23%)
TUDOR <805..839 CDD:119391 11/40 (28%)
TUDOR 981..1107 CDD:278965 27/126 (21%)
TUDOR 1296..1403 CDD:278965 27/134 (20%)
TUDOR 1337..1385 CDD:119391 13/47 (28%)
TUDOR 1710..1761 CDD:119391 16/53 (30%)
Rnf17XP_038949233.1 PHD_SF 30..72 CDD:419867 14/53 (26%)
BBC 137..>242 CDD:128778 28/177 (16%)
Tudor_TDRD4_rpt1 490..566 CDD:410485 7/75 (9%)
Tudor_TDRD4_rpt2 728..823 CDD:410486 24/100 (24%)
Tudor_TDRD4_rpt3 968..1049 CDD:410487 19/95 (20%)
Tudor_TDRD4_rpt4 1247..1314 CDD:410488 19/69 (28%)
Tudor_TDRD4_rpt5 1504..1608 CDD:410489 36/208 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I11425
eggNOG 1 0.900 - - E1_COG1525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 142 1.000 Inparanoid score I4387
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D117171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_110200
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X7549
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.770

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