DRSC/TRiP Functional Genomics Resources

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Protein Alignment qin and rsd-6

DIOPT Version :9

Sequence 1:NP_650735.3 Gene:qin / 42236 FlyBaseID:FBgn0263974 Length:1857 Species:Drosophila melanogaster
Sequence 2:NP_492269.2 Gene:rsd-6 / 172621 WormBaseID:WBGene00004684 Length:689 Species:Caenorhabditis elegans


Alignment Length:490 Identity:103/490 - (21%)
Similarity:185/490 - (37%) Gaps:149/490 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 DYATETLASISKRFS------HLHGLLQVAELQVIEKLRESSLPPQLKLNEAMGQLSGYETVIER 343
            |.::..||.:::||:      ....|..||...|:.|          |:.:|          :.:
 Worm   284 DASSPDLADLARRFNSSSINVQPQPLESVASSDVLSK----------KIAKA----------VRK 328

  Fly   344 LTKSLNSGVGNDMAVPRDVSLRWLLKLICEHLEKIPTTVQVSKVDENPYRVTCSRFM-DISNIFK 407
            :.|.||.|        ..:||..|...| |...||....:..|..|:        |: |:..|. 
 Worm   329 IMKKLNEG--------EKLSLENLFDEI-ERKNKILIPGKNGKEKED--------FLKDLKKIM- 375

  Fly   408 CEFVNPNIQVCFKTDLEISRSLSSSPKGEITF----LTSSSSSKENFDPHSRKLLLAQNSKLKKA 468
                 |.:......|.|         .|::|:    :|:.|...|..:......::.....|.||
 Worm   376 -----PKLLSALTIDTE---------TGDLTWNEAAVTTDSPIHEYMEDDLHYYVVDYVKMLDKA 426

  Fly   469 TQVSQSQKKRGKNATEV--AQSSLNSTAAIIDEFPAKDLDFLHNFSS---LDITKRNK--TTEDS 526
            ......:.:|..|||.|  .::....|..:...|..:     :.::|   .::.|.:|  |..|:
 Worm   427 RFRVTDEAERLSNATGVRMERTCEKLTYVLFITFEGE-----YRYASGSKTEVLKISKITTVGDA 486

  Fly   527 SDWFKTD-----------------TLVRVRSVQS----PEDFYVQGIHAAQRLREELDTFAHTLS 570
            .::::|.                 .:||.::||.    ||::    |...:::.:|:..|...:.
 Worm   487 PEFYQTSFEHKIFENVPANALVKCGIVRYQNVQKFAVRPEEY----IKPYEKMNQEIQDFMSQIR 547

  Fly   571 DSSSVP-----PTIVVGQNY--IIHHKDKD---RYYRALVSQKLTNENLYNVFLTDIGVHLHVRC 625
            :..|||     |      |:  ::...|..   ::.||::. |:..:.:: :|:.|.|....|..
 Worm   548 NEKSVPFEMWRP------NHACLVQLNDSTTILKWSRAMII-KIETQLIF-LFILDSGFRKVVPS 604

  Fly   626 SDFRVVPERISHLPYSAVHCSLSELMPKNGESEWDSKASAF-LKQIVQNNPVRVIVKKA------ 683
            ||.|::|::.:.||..|:.|:|.       |||.|.....| .|:.:.|.|..:.|..:      
 Worm   605 SDLRLMPQKFAKLPPFAIPCTLD-------ESEDDKDNIEFGGKEYLSNGPGNLSVTCSGAATAS 662

  Fly   684 ---LTYEL------HGVDLITSNYDTNISVRDSFL 709
               |||.:      ||..|      |||  :|.|:
 Worm   663 DGILTYPIKLFSTCHGGPL------TNI--KDVFI 689

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qinNP_650735.3 zf-RING_5 25..75 CDD:291308
BBOX 139..174 CDD:197662
TUDOR 536..648 CDD:278965 30/125 (24%)
TUDOR 741..859 CDD:278965
TUDOR <805..839 CDD:119391
TUDOR 981..1107 CDD:278965
TUDOR 1296..1403 CDD:278965
TUDOR 1337..1385 CDD:119391
TUDOR 1710..1761 CDD:119391
rsd-6NP_492269.2 PHA03307 82..>319 CDD:223039 9/34 (26%)
TUDOR 520..626 CDD:366171 26/117 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D117171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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