DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wdr37 and AT5G40880

DIOPT Version :9

Sequence 1:NP_650723.1 Gene:Wdr37 / 42218 FlyBaseID:FBgn0038617 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_198904.1 Gene:AT5G40880 / 834089 AraportID:AT5G40880 Length:472 Species:Arabidopsis thaliana


Alignment Length:439 Identity:87/439 - (19%)
Similarity:142/439 - (32%) Gaps:154/439 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DIATTTKESLIPPDAR---SAAGGSMSTQASSAALATPATQTDEVAGSFLAAASSTHKSL----- 113
            ::..|:||...|...|   :||.||...|               |.|:....::...|:.     
plant    79 NLVWTSKEYKSPEGNRPRQNAANGSAKPQ---------------VIGTGHRVSNQPRKNAVYGPR 128

  Fly   114 KAKLSSATG------GSKAKA-------SNKIKAQTSRIVSSFKA-PTVVSTVVREFGGHKDGIW 164
            .:.||...|      ||..|:       .|..|.:..:.:.|:.. |.:......|  |||:.|.
plant   129 SSSLSDTRGCGPRLNGSPKKSVCNFWKDGNCKKGEKCQFLHSWSCFPGLAMVAALE--GHKNDIK 191

  Fly   165 QVAAKAGQPIIGTASADHTACIWGVESARCL--LQYQGHAGSV------------NSIK-FHQQR 214
            .:|...|...:.:.|.|.|..||...|.:|:  :..|..|||:            |::| |:.|.
plant   192 GIALPQGSDKLFSVSGDGTLLIWDCNSGQCVRSINLQAEAGSLISEGPWVFLGLPNAVKAFNVQN 256

  Fly   215 D--------------------LVLTGSGDGTAHIWQAAVNWEVPKKGHSSEEELDDSDEQVEDRD 259
            .                    ::..|:..|:..:|:|.                 ||:..     
plant   257 SKDVHLEGVVGQVHAMTAANGMLFAGTSSGSILVWKAT-----------------DSESD----- 299

  Fly   260 RVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDRTAILWDVETGLPLQPLTGHDHELT 324
                   |....|...||.|..|.. ::...:.:.:||.|:|..:||:.|               
plant   300 -------PFKYLTSLEGHHSGEVTC-FVVGGEVLYSGSVDKTIKVWDLNT--------------- 341

  Fly   325 HVSAHPTQRLVVTASRDTTFRLWDFREAIPAVSVFQGHTETVTSSVFARDDKVVSGSDDRTIKVW 389
                                        :......:.|..||| |:...|..::|.|.|.|||:|
plant   342 ----------------------------LQCRMTLKQHIGTVT-SLLCWDKCLISSSLDGTIKLW 377

  Fly   390 ELRNMRS--ALATIRTDSSVNRLA----VSTGGIIAIPHDNRQIRLFDL 432
            ......|  .:.|.:.:.||:.|.    .....|:...:.|..:.:|||
plant   378 ACSENESLKVVQTRKQELSVHTLCGMHDAEAKPIMFCSYQNGAVGIFDL 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr37NP_650723.1 WD40 153..476 CDD:238121 64/321 (20%)
WD40 repeat 164..200 CDD:293791 9/37 (24%)
WD40 198..>481 CDD:225201 50/274 (18%)
WD40 repeat 205..274 CDD:293791 12/101 (12%)
WD40 repeat 282..317 CDD:293791 8/34 (24%)
WD40 repeat 323..360 CDD:293791 0/36 (0%)
WD40 repeat 366..403 CDD:293791 13/38 (34%)
WD40 repeat 407..430 CDD:293791 4/26 (15%)
WD40 repeat 452..481 CDD:293791
AT5G40880NP_198904.1 ZnF_C3H1 145..170 CDD:214632 4/24 (17%)
WD40 168..472 CDD:225201 66/335 (20%)
WD40 179..465 CDD:295369 64/324 (20%)
WD40 repeat 270..310 CDD:293791 8/68 (12%)
WD40 repeat 315..349 CDD:293791 8/77 (10%)
WD40 repeat 356..396 CDD:293791 12/40 (30%)
WD40 repeat 403..437 CDD:293791 5/24 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19855
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.