DRSC/TRiP Functional Genomics Resources

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Protein Alignment Wdr37 and Lis-1

DIOPT Version :10

Sequence 1:NP_650723.1 Gene:Wdr37 / 42218 FlyBaseID:FBgn0038617 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_477160.1 Gene:Lis-1 / 36791 FlyBaseID:FBgn0015754 Length:411 Species:Drosophila melanogaster


Alignment Length:429 Identity:106/429 - (24%)
Similarity:168/429 - (39%) Gaps:99/429 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 EREFEQLYLENQALQEKL-------DIATTTKESLIPPDARSAAGGSMS---------------- 80
            :|:.|:|   |||:.:.|       .:.|..||:.:..:.....||.:.                
  Fly     7 QRQREEL---NQAIADYLGSNGYADSLETFRKEADLSTEVEKKFGGLLEKKWTSVIRLQKKVMEL 68

  Fly    81 ----TQASSAALATPATQTDEVAGSFLAAASSTHKSLKAKLSSATGGSKAKASNKIKAQTSRI-- 139
                |:|....:....|:.....|.::.......        |.||.         :|..:|:  
  Fly    69 EAKLTEAEKEVIEGAPTKNKRTPGEWIPRPPEKF--------SLTGH---------RASITRVIF 116

  Fly   140 -------VSSFKAPTV------VSTVVREFGGHKDGIWQVAAKAGQPIIGTASADHTACIWGV-E 190
                   ||:.:..|:      .....|...||.|.:..||..|...::.:.|||.:..:|.. :
  Fly   117 HPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQ 181

  Fly   191 SARCLLQYQGHAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPK-KGH------------ 242
            |..|:....||..:|:|:.|....|.||:.|.|.|..:|:.|..:.|.. .||            
  Fly   182 SYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIE 246

  Fly   243 -------SSEEEL-----DDSDEQVEDRDRVDTLRTPLCEFTGPGGHLSVV---VAADWLSSMDQ 292
                   |:::.:     :..|.:||.||...|:.   |....|....|.:   ..||......|
  Fly   247 GSIFATCSNDQTIRVWLTNSKDCKVELRDHEHTVE---CIAWAPEAAASAINEAAGADNKKGHHQ 308

  Fly   293 ---IITGSWDRTAILWDVETGLPLQPLTGHDHELTHVSAHPTQRLVVTASRDTTFRLWDFREAIP 354
               :.:||.|:|..:|||..||.|..|:|||:.:..::.||..:.:|:||.|.|.|:||.|.. .
  Fly   309 GPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNK-R 372

  Fly   355 AVSVFQGHTETVTSSVFAR-DDKVVSGSDDRTIKVWELR 392
            .:.....|....||..|.: ...|:|||.|:|:||||.|
  Fly   373 CMKTLYAHQHFCTSIDFHKAHPYVISGSVDQTVKVWECR 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr37NP_650723.1 WD40 153..476 CDD:238121 82/273 (30%)
WD40 repeat 164..200 CDD:293791 9/36 (25%)
WD40 repeat 205..274 CDD:293791 22/93 (24%)
WD40 repeat 282..317 CDD:293791 13/37 (35%)
WD40 repeat 323..360 CDD:293791 11/36 (31%)
WD40 repeat 366..403 CDD:293791 14/28 (50%)
WD40 repeat 407..430 CDD:293791
WD40 repeat 452..481 CDD:293791
Lis-1NP_477160.1 LisH 9..40 CDD:128913 9/33 (27%)
WD40 100..409 CDD:238121 87/329 (26%)
WD40 repeat 111..148 CDD:293791 5/36 (14%)
WD40 repeat 154..191 CDD:293791 9/36 (25%)
WD40 repeat 196..232 CDD:293791 12/35 (34%)
WD40 repeat 239..274 CDD:293791 4/34 (12%)
WD40 repeat 280..336 CDD:293791 16/58 (28%)
WD40 repeat 342..378 CDD:293791 11/36 (31%)
WD40 repeat 384..408 CDD:293791 10/23 (43%)
Blue background indicates that the domain is not in the aligned region.

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