DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Wdr37 and caf4

DIOPT Version :9

Sequence 1:NP_650723.1 Gene:Wdr37 / 42218 FlyBaseID:FBgn0038617 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001342939.1 Gene:caf4 / 3361526 PomBaseID:SPAC664.15 Length:651 Species:Schizosaccharomyces pombe


Alignment Length:533 Identity:130/533 - (24%)
Similarity:208/533 - (39%) Gaps:136/533 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SKTRAVRLTSLTE----------DVAAVPEDAPFR---------------ARLHVL-----FAQI 38
            |.|..:.:||..:          ||:.|.:.:.|:               .||..|     .|||
pombe   128 SDTSPLPITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQHEKLVKKCNQLRLQKLINSSELAQI 192

  Fly    39 EREFEQLY------------LENQALQ--------EKL-------DIATTTKESLIPPDARSAAG 76
            :.|..:||            :|.|.|:        |||       |:.::....|||....:...
pombe   193 DLELSKLYSRRRQVLERLSKIEEQNLKYTSKLASVEKLMLDSDAQDLYSSYSHDLIPSQIEAGKN 257

  Fly    77 G---------------SMSTQASSAALATPATQTDEVAGSFLAAASSTHKSLKAKLSSATGGSKA 126
            |               ::|.:|.|.....|:|.::.|:..|             :.:||.  |||
pombe   258 GANPDVFDDTHDKYTDNLSARAISPRAPRPSTASEVVSDYF-------------EQNSAF--SKA 307

  Fly   127 KASNKIKAQTSRIVSSFKAPTVVSTVVREFGGHKDGIWQVAAKAGQPIIGTASADHTACIWGVES 191
            ..:.:         ||.....:|..:|::|..|.:.|..:........:.|||.|.|..:|.:..
pombe   308 PENTE---------SSVNQNYIVGNLVKQFQAHSEYITSLDFSHPFGTLATASTDKTVKVWDMAG 363

  Fly   192 ARCLLQYQGHAGSVNSIKFHQQRDLVLTGSGDGTAHIWQAAVNWEVPKKGHSSEEELDDSDEQVE 256
            ...|...:||:..|:.:..  |...:.|||.|.|..:|.  ::.:|..|.:..||.|:...:|  
pombe   364 VVYLGSLKGHSDYVSCLAI--QDSFIATGSMDTTVRLWN--LDNDVLHKDNPVEESLNSPPDQ-- 422

  Fly   257 DRDRVDTLRTPLCEFTGPGGHLSVVVAADWLSSMDQIITGSWDRTAILWDVETGLPLQPL----- 316
               .||.....|...|.|       |.|..|||.|.:|||:.|:|...||:.||..:|.|     
pombe   423 ---PVDNATNVLTSHTAP-------VTALALSSDDVLITGADDKTVRQWDIVTGRCIQTLDFVWA 477

  Fly   317 TGHDHELTHVSAHPTQR-------------LVVTASRDTTFRLWDFREAIPAVSVFQGHTETVTS 368
            ..||...:.:....|.:             .|.:.:.|...|:||.|..:| |..|.|||..::|
pombe   478 ETHDTSTSQILVSDTYKQEPFIRALDCLDAAVASGTVDGLIRIWDLRIGLP-VRSFIGHTAPISS 541

  Fly   369 SVFARDDKVVSGSDDRTIKVWELRNMRSALATIRTDSSVNRLAVSTGGIIAIPHDNRQIRLFDLN 433
            ..| ..:.:.|||.|.::::|:||: .|.:..|..:..||.|.:..|. :|:..|...:|:||..
pombe   542 LQF-DSNHLYSGSYDNSVRIWDLRS-GSPINIIPMEKKVNSLRLYQGR-LAVASDEPNVRIFDTV 603

  Fly   434 GQR--VARLPRTS 444
            ..|  :..:|..|
pombe   604 SNRNWICSIPSHS 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Wdr37NP_650723.1 WD40 153..476 CDD:238121 87/312 (28%)
WD40 repeat 164..200 CDD:293791 7/35 (20%)
WD40 198..>481 CDD:225201 76/267 (28%)
WD40 repeat 205..274 CDD:293791 18/68 (26%)
WD40 repeat 282..317 CDD:293791 17/39 (44%)
WD40 repeat 323..360 CDD:293791 9/49 (18%)
WD40 repeat 366..403 CDD:293791 11/36 (31%)
WD40 repeat 407..430 CDD:293791 7/22 (32%)
WD40 repeat 452..481 CDD:293791
caf4NP_001342939.1 WD40 324..650 CDD:238121 87/313 (28%)
WD40 repeat 336..372 CDD:293791 7/35 (20%)
WD40 repeat 377..431 CDD:293791 16/62 (26%)
WD40 repeat 439..473 CDD:293791 15/33 (45%)
WD40 repeat 484..533 CDD:293791 9/49 (18%)
WD40 repeat 539..573 CDD:293791 10/35 (29%)
WD40 repeat 578..600 CDD:293791 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4175
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.