DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vti1b and Vti1b

DIOPT Version :10

Sequence 1:NP_001138075.1 Gene:Vti1b / 42215 FlyBaseID:FBgn0264751 Length:122 Species:Drosophila melanogaster
Sequence 2:NP_058080.2 Gene:Vti1b / 53612 MGIID:1855688 Length:232 Species:Mus musculus


Alignment Length:119 Identity:52/119 - (43%)
Similarity:80/119 - (67%) Gaps:0/119 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSYAGYSQLPSGSDQERRQAQLAASTYDVLQRTTDSIQRSNQIAIETENMGAEVLGELGEQRESL 65
            :.|..|:......::.:.|..|.....:.|.|.|.||:||::||.||:.:|.|::.||||||:.|
Mouse   110 LKYGTYTLENEHLNRLQSQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQL 174

  Fly    66 LRTTRRLEDADQDLSKSRVIIRKLSREVLYNKIILILIIILEVGILVGLLVLKF 119
            .||..||.:.:::|||||.|:|.:||:|:.||::|.:||:||:.|||||:..||
Mouse   175 ERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLLSVIILLELAILVGLVYYKF 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vti1bNP_001138075.1 SNARE_Vti1b 27..88 CDD:277243 30/60 (50%)
Vti1bNP_058080.2 Interaction with CLINT1. /evidence=ECO:0000250|UniProtKB:Q9UEU0 2..23
V-SNARE 18..96 CDD:461516
Interaction with CLINT1. /evidence=ECO:0000250|UniProtKB:Q9UEU0 69..73
SNARE_Vti1b 136..197 CDD:277243 30/60 (50%)
Blue background indicates that the domain is not in the aligned region.

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