DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Vha100-4 and Atp6v0a4

DIOPT Version :9

Sequence 1:NP_650720.1 Gene:Vha100-4 / 42214 FlyBaseID:FBgn0038613 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_006236358.1 Gene:Atp6v0a4 / 296981 RGDID:1305055 Length:829 Species:Rattus norvegicus


Alignment Length:851 Identity:399/851 - (46%)
Similarity:567/851 - (66%) Gaps:57/851 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SIFRSEVMSLVQMYLQPEAAYDTIAALGEVGCVQFRDLNAKINAQQRKFIGEVRRCDELERRIRY 79
            |:||||.|.|.|::||.||||..:|.|||:|.|||:||||.:|:.||||:.|||||:.|||.:|:
  Rat     3 SVFRSEEMCLSQVFLQVEAAYCCVAELGELGLVQFKDLNANVNSFQRKFVNEVRRCESLERILRF 67

  Fly    80 VTAELNKEGHKVLDLMDDFPPAPQPREIIDLELHLEKTETEILELAANNVNLQTSYLELSEMIQV 144
            :..|:..|  .::.:.|..|..|.|||:|.||..|||.|.|:.|...::..|:.|:|||:|:..:
  Rat    68 LEDEMQNE--IIIQVPDKDPGTPLPREMITLETTLEKLEGELQEANQSHQALKKSFLELTELKYL 130

  Fly   145 LERT-----------DQFFSDQESHNFDLNKMGTHRDPEKSNGHLGFVAGVISREREYAFERMLW 198
            |::|           :.||.:..|...:|..|     |....|.|||.||||:|||..:|||:||
  Rat   131 LKKTQDFFETETNLGEDFFVEDTSGLLELRAM-----PAFMTGKLGFTAGVINRERMASFERLLW 190

  Fly   199 RISRGNVFVRRCDVDVALTDPKTGNVLHKSVFVVFFQGDQLQARIRKVCTGFHAHMYPCPSSHSE 263
            |:.||||:::..::|..|.||.|...:.|::|::|:||:||:.:|:|:|.||.|.:||||...:|
  Rat   191 RVCRGNVYLKFSEMDTLLEDPVTKEEIKKNIFIIFYQGEQLRLKIKKICDGFRATIYPCPEHAAE 255

  Fly   264 RQEMVKNVRTRLEDLQVIINQTSDHRTCVLQAALKQLPTWSAMVKKMKGIYHTLNLFNVDLGSKC 328
            |:||:.:|..|||||..:|.||..||..:||.|.....:|...|:|||.:||.||:.|:|:..:|
  Rat   256 RREMLASVNVRLEDLITVITQTESHRQRLLQEAASNWHSWVIKVQKMKAVYHVLNMCNIDVTQQC 320

  Fly   329 LIGEGWVPKRELELVEVALAAGSASVGSTVPSFINVLDTKKEPPTHFRTNKFTRGFQNLIDAYGI 393
            :|.|.|.|..:...::.||..|....||::...:..::||.:|||..||||||.||||::||||:
  Rat   321 IIAEIWFPVADTRHIKKALEQGMELSGSSMVPIMTEVETKTDPPTFNRTNKFTAGFQNIVDAYGV 385

  Fly   394 AGYREVNPGLYTCITFPFLFAVMFGDMGHGTILFLLGLWMVIDEKR-LSKKRGGEIWNIFFAGRY 457
            ..|||:||..||.|||||||||||||.|||.::.:..||||::|:. |::|...|:|||||.|||
  Rat   386 GSYREINPAPYTIITFPFLFAVMFGDCGHGMVMLMAALWMVLNERHLLAQKSTNEMWNIFFNGRY 450

  Fly   458 IIMLMGLFAMYTGFHYNDIFSKSINVFGTRWV-------NVYNRTTVLTNPTLQLNPSVATRGV- 514
            :|:|||:|::|||..|||.||||.|:||:.|.       ..:|...|..||.|||:|::.  || 
  Rat   451 LILLMGIFSIYTGLIYNDCFSKSFNIFGSSWSVQPMFRNGTWNAHVVEQNPYLQLDPAIP--GVY 513

  Fly   515 ----YPMGIDPIWQSASNKIIFLNTYKMKLSIIFGVLHMVFGVCMSVENFVFFKKYAYIILQFVP 575
                ||.||||||..||||:.|||:||||:|:|.|::||:|||.:|:.|.::|::...|||||:|
  Rat   514 SGNPYPFGIDPIWNLASNKLTFLNSYKMKMSVILGIVHMIFGVILSLFNHIYFRRTLNIILQFIP 578

  Fly   576 QVLFLLLMFGYMCFMMFYKWVKYSPTTDVEADTPGCAPSVLIMFIDMVLFKTETALPGCDVNMFP 640
            :::|:|.:|||:.||:.:||.:|      :|.|...|||:||.||.|.||..:.:   .:..::.
  Rat   579 EMIFMLSLFGYLVFMIIFKWCQY------DAHTSQKAPSILIHFIGMFLFDYDDS---SNAPLYG 634

  Fly   641 IQKNLEMIFLVVALLCIPWILLGKP--LYIKYQRRNRPAGPVEEVDEIVEKIEVTTGKEIIITEV 703
            .|:.::..|:::||:.:||:||.||  |..|:|:....:..:.|        :...|..  :.:.
  Rat   635 HQQEVQTFFVIIALVSVPWMLLIKPFILRAKHQKSQLQSFTIHE--------DAMEGPS--VKKT 689

  Fly   704 AEAH-ESGGHSEEDDEPMSEIWIHQAIHTIEYILSTISHTASYLRLWALSLAHAQLSEVLWTMVL 767
            |.|| ...||.||.:  ..:|::|||||||||.|..||:|||||||||||||||:|||||||||:
  Rat   690 AGAHGTKEGHEEEFN--FGDIFVHQAIHTIEYCLGCISNTASYLRLWALSLAHAELSEVLWTMVM 752

  Fly   768 AMGLQMNGYVGAIGLFFIFAVWEFFTIAIMVMMEGLSAFLHTLRLHWVEFMSKFYVGNGYPFTPF 832
            ::||::.|:.|.:|:|.||||:...|:||:::|||||||||.||||||||.:|||.|.|:.|:||
  Rat   753 SIGLRLRGWGGLVGVFIIFAVFAVLTVAILLVMEGLSAFLHALRLHWVEFQNKFYEGAGFKFSPF 817

  Fly   833 SFKDIL 838
            |||.:|
  Rat   818 SFKHVL 823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha100-4NP_650720.1 NtpI 17..836 CDD:224188 396/845 (47%)
V_ATPase_I 40..834 CDD:279793 380/820 (46%)
Atp6v0a4XP_006236358.1 NtpI 28..820 CDD:224188 381/821 (46%)
V_ATPase_I 28..819 CDD:279793 380/820 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1269
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53812
OrthoDB 1 1.010 - - D164762at33208
OrthoFinder 1 1.000 - - FOG0000328
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100301
Panther 1 1.100 - - O PTHR11629
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X226
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.830

Return to query results.
Submit another query.