DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7675 and rdh13

DIOPT Version :10

Sequence 1:NP_650717.1 Gene:CG7675 / 42211 FlyBaseID:FBgn0038610 Length:336 Species:Drosophila melanogaster
Sequence 2:NP_001011000.1 Gene:rdh13 / 496409 XenbaseID:XB-GENE-965068 Length:329 Species:Xenopus tropicalis


Alignment Length:317 Identity:131/317 - (41%)
Similarity:185/317 - (58%) Gaps:16/317 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 AAIVATLMSIRFYLR--ITAGRCFTETKMEGKTVIITGANSGIGKETAKDLAGRGARIIMACRNL 86
            |::|.|.:.....|:  ...|.|.::..:.|:|||:||||:|||||||.:||.||.|||||||::
 Frog     8 ASMVGTALGGAILLKDYTGGGNCPSKASIIGQTVIVTGANTGIGKETALELAKRGGRIIMACRDM 72

  Fly    87 -ETANAVKDEIVKETKNNKILVKKLDLGSQKSVREFAADIVKTEPKIDVLIHNAGMALAFRGQTS 150
             :..||.:| |..:|.|:.:..:.|||.|.||::|||..|:..|.::||||:||.:......:| 
 Frog    73 GKCENAARD-IRGKTLNHNVFARHLDLASSKSIKEFAKTIINEEERVDVLINNAAVMRCPHWKT- 135

  Fly   151 EDGVELTMATNHYGPFLLTHLLIDVLKKSAPARIVIVASELYRLSSVNLAKLN----PIGTFPAA 211
            ||..|:....||.|.||||:||::.:|:|..:||:.|:|..:....::...||    ...|..| 
 Frog   136 EDNFEMQFGVNHLGHFLLTNLLLEKMKRSENSRIINVSSLAHIAGDIDFDDLNWEKKKYNTKAA- 199

  Fly   212 YLYYVSKFANIYFARELAKRLEGTKVTVNFLHPGMIDSGIWRNVPFPLNLPMMAITKGFF----K 272
              |..||.||:.|..||||||:|||:|.|.||||:.|:.:.|:.....:.....|....|    |
 Frog   200 --YCQSKLANVLFTNELAKRLQGTKLTANSLHPGVADTELGRHTGMHQSAFSSTILAPLFWFLVK 262

  Fly   273 TTKAGAQTTIYLATSNEVANVSGKYFMDCKEATLNAAALDEEKGLKIWEESVKIVKL 329
            :.|..||.::|||.:..:..||||||...||......|||||...|:||||.|:|.|
 Frog   263 SPKQAAQPSVYLAVAENLQGVSGKYFNALKEKEPAPQALDEESARKLWEESAKLVHL 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7675NP_650717.1 retinol-DH_like_SDR_c_like 52..320 CDD:212492 118/276 (43%)
rdh13NP_001011000.1 retinol-DH_like_SDR_c 38..313 CDD:212495 120/279 (43%)

Return to query results.
Submit another query.