DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and Zkscan8

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_631880.2 Gene:Zkscan8 / 93681 MGIID:1913815 Length:588 Species:Mus musculus


Alignment Length:155 Identity:71/155 - (45%)
Similarity:98/155 - (63%) Gaps:6/155 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 GEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCP 496
            || :|..|..|||.::..|.|..|.|.|:||:||.|.:|.|:|.::::|..|.|:|||:||::|.
Mouse   440 GE-RPYECNECGKAFSHSSHLIGHQRIHTGEKPYECDECGKTFRRSSHLIGHQRSHTGEKPYKCN 503

  Fly   497 ICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQS 561
            .|.|.|||.|.:..|.|.|:|||||:|..|.|:|:.::.|.:|||||:|||||||..|...|.|.
Mouse   504 ECGRAFSQKSGLIEHQRIHTGERPYKCKECGKAFNGNTGLIQHLRIHTGEKPYQCSECRKAFIQR 568

  Fly   562 GNLNRHMRVHGNNNSSNGSNGATGV 586
            .:|.||.|:|......     :|||
Mouse   569 SSLIRHQRIHSAEKPQ-----STGV 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 67/138 (49%)
C2H2 Zn finger 439..459 CDD:275368 8/19 (42%)
C2H2 Zn finger 467..487 CDD:275368 7/19 (37%)
C2H2 Zn finger 495..515 CDD:275368 9/19 (47%)
C2H2 Zn finger 523..543 CDD:275368 8/19 (42%)
C2H2 Zn finger 551..571 CDD:275368 8/19 (42%)
Zkscan8NP_631880.2 SCAN 48..158 CDD:128708
KRAB_A-box 233..268 CDD:143639
COG5048 <322..574 CDD:227381 64/134 (48%)
C2H2 Zn finger 334..354 CDD:275368
C2H2 Zn finger 363..382 CDD:275368
C2H2 Zn finger 390..410 CDD:275368
C2H2 Zn finger 418..438 CDD:275368
C2H2 Zn finger 446..466 CDD:275368 8/19 (42%)
C2H2 Zn finger 474..494 CDD:275368 7/19 (37%)
C2H2 Zn finger 502..522 CDD:275368 9/19 (47%)
C2H2 Zn finger 530..550 CDD:275368 8/19 (42%)
C2H2 Zn finger 558..578 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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