DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and AT5G22890

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_197680.2 Gene:AT5G22890 / 832353 AraportID:AT5G22890 Length:373 Species:Arabidopsis thaliana


Alignment Length:167 Identity:39/167 - (23%)
Similarity:64/167 - (38%) Gaps:44/167 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 CRLCGKTYARPSTLKTHLRTHSGE-----------------------RPYRCPDCNKSFSQAANL 480
            |::|||.:.|.:.|:.|:|.|..|                       ..|.||.....::|    
plant   219 CQICGKGFKRDANLRMHMRAHGDEYKTREALISPTSQDKKGGYSLKKHYYSCPQHGCRWNQ---- 279

  Fly   481 TAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCK-KSFSDSSTLTKHLRIHS 544
                 .|...:|.:..||.:..        :.|:|. .:.|.|..|. |.||..|.|..|.: |.
plant   280 -----RHEKFQPLKSVICAKNH--------YKRSHC-PKMYMCRRCSVKHFSVLSDLRTHEK-HC 329

  Fly   545 GEKPYQCKLCLLRFSQSGNLNRHMRVHGNNNSSNGSN 581
            |:..:.|. |..:||:...|..|:.:...:..::||:
plant   330 GDIKWVCS-CGTKFSRKDKLMSHVSLFLGHVPAHGSS 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 8/19 (42%)
zf-C2H2 439..459 CDD:278523 8/19 (42%)
zf-H2C2_2 452..476 CDD:290200 8/46 (17%)
C2H2 Zn finger 467..487 CDD:275368 3/19 (16%)
zf-H2C2_2 479..504 CDD:290200 4/24 (17%)
zf-C2H2_8 492..570 CDD:292531 22/78 (28%)
C2H2 Zn finger 495..515 CDD:275368 3/19 (16%)
zf-H2C2_2 507..531 CDD:290200 6/24 (25%)
C2H2 Zn finger 523..543 CDD:275368 8/20 (40%)
zf-H2C2_2 536..560 CDD:290200 7/23 (30%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
AT5G22890NP_197680.2 zf-C2H2 217..239 CDD:333835 8/19 (42%)
C2H2 Zn finger 219..239 CDD:275368 8/19 (42%)
C2H2 Zn finger 308..328 CDD:275368 8/20 (40%)
C2H2 Zn finger 336..352 CDD:275368 5/16 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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