DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment gl and JKD

DIOPT Version :9

Sequence 1:	NP_001262708.1	Gene:	gl / 42210	FlyBaseID:	FBgn0004618	Length:	679	Species:	Drosophila melanogaster
Sequence 2:	NP_195935.2	Gene:	JKD / 831919	AraportID:	AT5G03150	Length:	503	Species:	Arabidopsis thaliana

Alignment Length:	324	Identity:	64/324 - (19%)
Similarity:	101/324 - (31%)	Gaps:	96/324 - (29%)

- Green bases have known domain annotations that are detailed below.

  Fly   359 LPPLTVGEKESPSPPANSSLAGYYPTGVGNQGYTPPHK------SPTSYQAAALGLSLSAFEDEE 417
            :|.|......:|:...|||.|    ....||..||...      |||:..|.      :.|
plant    32 IPDLNPNSNPNPNAKPNSSSA----KKKRNQPGTPDPDADVIALSPTTLMAT------NRF---- 82

  Fly   418 DSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPSTLKTHLRTHS--------------GERPYRCP 468
                                :|.:|.|.:.|...|:.|.|.|:              .::.|.||
plant    83 --------------------VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICP 127

  Fly   469 -------DCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSC 526
                   |.:::......:..|.....|:|.::|..|.::::..|....|.:| .|.|.|:| .|
plant   128 IKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKT-CGTREYKC-DC 190

  Fly   527 KKSFSDSSTLTKH-------------LRIHSGEKPYQCKLCLLRFSQSGNLNR---------HMR 569
            ...||...:...|             :...|...|. .....|.|....|:..         |..
plant   191 GTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPV-ISTTNLNFGNESNVMNNPNLPHGFVHRG 254

  Fly   570 VHGNNNSSNGSNGATGVGGESSTGSGVGGGNSLLTXQKPRSAGGFQHYHPPHTHHM-----HHQ 628
            ||..:.::..|....|.|.:.|.....|     |: ....::.|..|..|..:..:     |||
plant   255 VHHPDINAAISQFGLGFGHDLSAMHAQG-----LSEMVQMASTGNHHLFPSSSSSLPDFSGHHQ 313

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
gl	NP_001262708.1	C2H2 Zn finger	439..459	CDD:275368	7/19 (37%)
		zf-C2H2	439..459	CDD:278523	7/19 (37%)
		zf-H2C2_2	452..476	CDD:290200	8/44 (18%)
		C2H2 Zn finger	467..487	CDD:275368	4/26 (15%)
		zf-H2C2_2	479..504	CDD:290200	5/24 (21%)
		zf-C2H2_8	492..570	CDD:292531	19/99 (19%)
		C2H2 Zn finger	495..515	CDD:275368	4/19 (21%)
		zf-H2C2_2	507..531	CDD:290200	7/23 (30%)
		C2H2 Zn finger	523..543	CDD:275368	5/32 (16%)
		zf-H2C2_2	536..560	CDD:290200	5/36 (14%)
		C2H2 Zn finger	551..571	CDD:275368	4/28 (14%)
JKD	NP_195935.2	C2H2 Zn finger	84..104	CDD:275368	7/19 (37%)
		C2H2 Zn finger	126..154	CDD:275368	4/27 (15%)
		C2H2 Zn finger	161..180	CDD:275368	4/18 (22%)
		C2H2 Zn finger	188..204	CDD:275368	4/16 (25%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	0	0.000