DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and Zkscan3

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_076174.3 Gene:Zkscan3 / 72739 MGIID:1919989 Length:553 Species:Mus musculus


Alignment Length:133 Identity:65/133 - (48%)
Similarity:88/133 - (66%) Gaps:0/133 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 CRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFS 503
            ||.|||::|:.|.|..|.|.|:|.:||.|.:|.|:|..::.|..|.|.|||:||:.|..|.:.||
Mouse   315 CRECGKSFAQSSGLSKHKRIHTGLKPYECEECGKAFIGSSALIIHQRVHTGEKPYECEECGKAFS 379

  Fly   504 QSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHM 568
            .||.:..|.|||:||:||.|..|.|:|:.|.:|.:|.|||:|||||||.:|...|.:|.:|.||.
Mouse   380 HSSDLIKHQRTHTGEKPYECDDCGKTFTQSCSLLEHHRIHTGEKPYQCNMCPKAFRRSSHLLRHQ 444

  Fly   569 RVH 571
            |.|
Mouse   445 RTH 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 64/131 (49%)
C2H2 Zn finger 439..459 CDD:275368 10/19 (53%)
C2H2 Zn finger 467..487 CDD:275368 7/19 (37%)
C2H2 Zn finger 495..515 CDD:275368 8/19 (42%)
C2H2 Zn finger 523..543 CDD:275368 8/19 (42%)
C2H2 Zn finger 551..571 CDD:275368 8/19 (42%)
Zkscan3NP_076174.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 28..49
SCAN 47..159 CDD:128708
KRAB 213..267 CDD:214630
zf-C2H2 313..335 CDD:395048 10/19 (53%)
C2H2 Zn finger 315..335 CDD:275368 10/19 (53%)
zf-H2C2_2 328..350 CDD:463886 10/21 (48%)
zf-C2H2 341..363 CDD:395048 8/21 (38%)
C2H2 Zn finger 343..363 CDD:275368 7/19 (37%)
COG5048 <367..514 CDD:227381 41/81 (51%)
C2H2 Zn finger 371..391 CDD:275368 8/19 (42%)
C2H2 Zn finger 399..419 CDD:275368 8/19 (42%)
C2H2 Zn finger 427..447 CDD:275368 8/19 (42%)
C2H2 Zn finger 481..501 CDD:275368
zf-C2H2 507..529 CDD:395048
C2H2 Zn finger 509..529 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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