DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and znf350

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001016767.1 Gene:znf350 / 549521 XenbaseID:XB-GENE-5810601 Length:291 Species:Xenopus tropicalis


Alignment Length:226 Identity:81/226 - (35%)
Similarity:104/226 - (46%) Gaps:46/226 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 GEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCP 496
            || ||.:|..|||.::|...|..|...|:||:|:.|.:|.|||.....||.|.|.|||.||:.|.
 Frog    68 GE-KPFVCTECGKNFSRKHYLTEHQLIHTGEKPFVCMECGKSFRVKHILTDHQRLHTGAKPYACT 131

  Fly   497 ICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQS 561
            .||::|::.||:..|.|.|:|.:|:.|..|.|||||.||..||.|||:||||:.|..|...|:..
 Frog   132 ECDKQFNKRSSLLGHQRIHTGVKPFVCMECGKSFSDKSTFQKHQRIHTGEKPFSCTECGKCFTTK 196

  Fly   562 GNLNRHMRVHGNNNSSNGSNGATGVGGESSTGSGVGGGNSLLTXQKPRSAGGFQHYHPPHTHHMH 626
            ..|.||.:||            ||....|.|..    |...||..|..|            |:|.
 Frog   197 SQLTRHYKVH------------TGEKPFSCTEC----GKCFLTKTKLSS------------HYMV 233

  Fly   627 H-----------------QHHAHHHHHAHMG 640
            |                 :.....|:..|.|
 Frog   234 HTGEKPFACADCGKCFTKKSQLSSHYKVHTG 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 64/138 (46%)
C2H2 Zn finger 439..459 CDD:275368 7/19 (37%)
C2H2 Zn finger 467..487 CDD:275368 9/19 (47%)
C2H2 Zn finger 495..515 CDD:275368 8/19 (42%)
C2H2 Zn finger 523..543 CDD:275368 12/19 (63%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
znf350NP_001016767.1 COG5048 15..290 CDD:227381 81/226 (36%)
C2H2 Zn finger 18..38 CDD:275368
C2H2 Zn finger 46..66 CDD:275368
C2H2 Zn finger 74..94 CDD:275368 7/19 (37%)
C2H2 Zn finger 102..122 CDD:275368 9/19 (47%)
C2H2 Zn finger 130..150 CDD:275368 8/19 (42%)
C2H2 Zn finger 158..178 CDD:275368 12/19 (63%)
C2H2 Zn finger 186..206 CDD:275368 6/19 (32%)
C2H2 Zn finger 214..234 CDD:275368 8/35 (23%)
C2H2 Zn finger 242..262 CDD:275368 1/19 (5%)
C2H2 Zn finger 270..290 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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