DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gl and egrh-3

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001368224.1 Gene:egrh-3 / 4363076 WormBaseID:WBGene00044651 Length:320 Species:Caenorhabditis elegans


Alignment Length:450 Identity:103/450 - (22%)
Similarity:141/450 - (31%) Gaps:192/450 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 PNSHNHGQMHSQHQQHQHQQSQVQASH--------VGNSLLQSSGGNNIGSNGS--AGGVANAAS 252
            |.:...||..|||.|.|.||.|.||.|        :.|.:: ||..||...|||  :..:.|...
 Worm    11 PQTSFGGQSSSQHMQQQQQQQQQQAPHPHQNQHAQLINRII-SSAYNNQHDNGSFDSSILLNGQQ 74

  Fly   253 CY-YETSAGTAAPPPPPAAAMYPSMSVNVSMNMTMHHGYGAGDAGGVPMQCSQMNWTPPSNSTSA 316
            .: ::...|                    ..|..|.:| |.|..|.        |...|...|:.
 Worm    75 KFQFDLFQG--------------------HQNHLMQNG-GGGLLGN--------NQQAPRGGTNG 110

  Fly   317 AAAAAAVNVLYPPLLSPGHYPASATYSFTADFRAPAPTGLGALPPLTVGEKESPSPPANSSLAGY 381
            .::                  :|.|.:.|...:.....|.|..|.|                   
 Worm   111 TSS------------------SSTTATTTTSTKKKKGQGPGRRPAL------------------- 138

  Fly   382 YPTGVGNQGYTPPHKSPTSYQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLCRLCGKTY 446
                                                |:|           |..|           
 Worm   139 ------------------------------------DAN-----------GMPK----------- 145

  Fly   447 ARPSTLKTHLRTHSGERPYRC--PDCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVT 509
                           |||:.|  |||.|.|.:..:|..|:|.||||:.|:|..|.|.||:|..:.
 Worm   146 ---------------ERPFVCPRPDCQKRFCRNDHLQRHMRIHTGQRLFQCRTCLRSFSRSDHLA 195

  Fly   510 THMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNR-------- 566
            .|.||||.::||.|.:|.:.|.......||      |:..|.|   :...|.|...|        
 Worm   196 KHERTHSADKPYSCLTCARRFHKHEEKKKH------EEKCQHK---VEDQQQGGAGRQQLNLMGN 251

  Fly   567 -------HMRVHGNNNSSNGSN-----GAT------GVGGESSTGSGVGGGNSLLTXQKP 608
                   .|.::|:..|.|.:|     .||      |.||.:|..|..|||:|    |:|
 Worm   252 AHNMYPNQMILNGSMQSPNSNNLNMMIPATTFKLQGGAGGGASQASAPGGGSS----QQP 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 0/19 (0%)
zf-C2H2 439..459 CDD:278523 0/19 (0%)
zf-H2C2_2 452..476 CDD:290200 9/25 (36%)
C2H2 Zn finger 467..487 CDD:275368 9/21 (43%)
zf-H2C2_2 479..504 CDD:290200 12/24 (50%)
zf-C2H2_8 492..570 CDD:292531 26/92 (28%)
C2H2 Zn finger 495..515 CDD:275368 8/19 (42%)
zf-H2C2_2 507..531 CDD:290200 9/23 (39%)
C2H2 Zn finger 523..543 CDD:275368 5/19 (26%)
zf-H2C2_2 536..560 CDD:290200 5/23 (22%)
C2H2 Zn finger 551..571 CDD:275368 5/34 (15%)
egrh-3NP_001368224.1 zf-C2H2 149..173 CDD:395048 9/23 (39%)
C2H2 Zn finger 154..173 CDD:275368 8/18 (44%)
zf-H2C2_2 165..190 CDD:404364 12/24 (50%)
C2H2 Zn finger 181..201 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 118 1.000 Inparanoid score I3365
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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