DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and CG4936

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_650862.1 Gene:CG4936 / 42393 FlyBaseID:FBgn0038768 Length:521 Species:Drosophila melanogaster


Alignment Length:242 Identity:73/242 - (30%)
Similarity:106/242 - (43%) Gaps:42/242 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   394 PHKSPTSYQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMK----------------------- 435
            |.:|.||..:.|:..|.|...|..:..:...|:..|:|.:|.                       
  Fly   281 PRRSATSTASVAVESSTSKTTDRGNPLKVRRGNSDSAGSKMSIKSEKDISIGEVLARKHSGIKTK 345

  Fly   436 -------------PNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTH 487
                         ..:|.:||..|...|.|..|::.|||.:|:.|..|...|:||..|..|:.||
  Fly   346 GGHKILLGDKKEFKYICDVCGNMYPSQSRLTEHIKVHSGVKPHECEICGHCFAQAQQLARHMNTH 410

  Fly   488 TGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCK 552
            ||.:|::|..|...|:..|:...|.|.|:.||||.|..|.|:|:.::||..|..||:||||:.|.
  Fly   411 TGNRPYKCSYCPAAFADLSTRNKHHRIHTNERPYECDVCHKTFTYTNTLKFHKMIHTGEKPHVCD 475

  Fly   553 LCLLRFSQSGNLNRHMRVHGNNNSSNGSNGATGVGGESS--TGSGVG 597
            :|...|.|:..|..|..:|    ...|.:....|.|..|  |.:.||
  Fly   476 VCGKGFPQAYKLRNHRVIH----ERRGQSARESVAGLVSYDTANIVG 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 7/19 (37%)
zf-C2H2 439..459 CDD:278523 7/19 (37%)
zf-H2C2_2 452..476 CDD:290200 9/23 (39%)
C2H2 Zn finger 467..487 CDD:275368 7/19 (37%)
zf-H2C2_2 479..504 CDD:290200 10/24 (42%)
zf-C2H2_8 492..570 CDD:292531 31/77 (40%)
C2H2 Zn finger 495..515 CDD:275368 6/19 (32%)
zf-H2C2_2 507..531 CDD:290200 10/23 (43%)
C2H2 Zn finger 523..543 CDD:275368 7/19 (37%)
zf-H2C2_2 536..560 CDD:290200 11/23 (48%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
CG4936NP_650862.1 zf-AD 22..95 CDD:214871
C2H2 Zn finger 362..382 CDD:275368 7/19 (37%)
zf-H2C2_2 375..399 CDD:290200 9/23 (39%)
COG5048 386..>447 CDD:227381 24/60 (40%)
C2H2 Zn finger 390..410 CDD:275368 7/19 (37%)
zf-H2C2_2 403..426 CDD:290200 9/22 (41%)
C2H2 Zn finger 418..438 CDD:275368 6/19 (32%)
zf-H2C2_2 432..455 CDD:290200 11/22 (50%)
C2H2 Zn finger 446..466 CDD:275368 7/19 (37%)
zf-H2C2_2 459..481 CDD:290200 10/21 (48%)
C2H2 Zn finger 474..494 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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