DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gl and CG4424

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_650859.3 Gene:CG4424 / 42390 FlyBaseID:FBgn0038765 Length:345 Species:Drosophila melanogaster


Alignment Length:271 Identity:88/271 - (32%)
Similarity:117/271 - (43%) Gaps:62/271 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   308 TPPSNSTSAAAAAAAVNVLYPP---LLSPGHYPASATYSFTADFRAPAPTGLGALPPLTVGEKES 369
            |||...|..         |.||   :|..|.:.       |.|.....|.|        ..|||.
  Fly   114 TPPPIETEQ---------LEPPEDEVLEEGVWS-------TEDPIEETPHG--------PAEKER 154

  Fly   370 PSPPANSSLAGYYPTGVGNQGYTPPHKSPTSYQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEM 434
            |:......|...||         ||..:|....|.|:                          :.
  Fly   155 PTVLTVEMLPAPYP---------PPASTPPPAPAGAV--------------------------KG 184

  Fly   435 KPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFRCPICD 499
            |.::|.:||..|.|.|||.||:|.|:.||||.|..|:|||.....|..|:|.|||.||:.|..|.
  Fly   185 KLHVCAICGNGYPRKSTLDTHMRRHNDERPYECEICHKSFHVNYQLKRHIRQHTGAKPYTCQYCQ 249

  Fly   500 RRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNL 564
            |.|:..:|:..|.|||..||||.|.:|.|.|:.:|.|..|.:.|:||||:.|:||...|::..||
  Fly   250 RNFADRTSLVKHERTHRNERPYACKTCGKKFTYASVLKMHYKTHTGEKPHICQLCNKSFARIHNL 314

  Fly   565 NRHMRVHGNNN 575
            ..|::...:.|
  Fly   315 VAHLQTQQHIN 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 62/144 (43%)
C2H2 Zn finger 439..459 CDD:275368 11/19 (58%)
C2H2 Zn finger 467..487 CDD:275368 8/19 (42%)
C2H2 Zn finger 495..515 CDD:275368 7/19 (37%)
C2H2 Zn finger 523..543 CDD:275368 7/19 (37%)
C2H2 Zn finger 551..571 CDD:275368 7/19 (37%)
CG4424NP_650859.3 zf-AD 10..92 CDD:462262
C2H2 Zn finger 189..209 CDD:275368 11/19 (58%)
COG5048 210..>345 CDD:227381 50/116 (43%)
C2H2 Zn finger 217..237 CDD:275368 8/19 (42%)
C2H2 Zn finger 245..265 CDD:275368 7/19 (37%)
C2H2 Zn finger 273..293 CDD:275368 7/19 (37%)
C2H2 Zn finger 301..320 CDD:275368 7/18 (39%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.