DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gl and rn

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster


Alignment Length:663 Identity:153/663 - (23%)
Similarity:226/663 - (34%) Gaps:191/663 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 FGLALDSPQQE----CAASCVGCLSCQGSTALPISSLTSSDFDCGGCFDPTIGVGVGIGGGHIQI 111
            ||.::.||..|    .||:|....:..|....| :||:.        .:|...:     ..:...
  Fly   224 FGSSIKSPPSEPDAVTAATCKSQENNSGQNPTP-NSLSD--------HNPAHNL-----NSNSTA 274

  Fly   112 STTPPASSGNGSSNNGAGG--GSSGNHG--YWSTDEMASTFPGLPPLDIDPLPSLFPFSPCGASY 172
            :....|::...::|...||  |.:...|  :|.:..||....|  ....||       ...|..|
  Fly   275 AAVAAAAAAAAAANMPIGGVQGQNPTQGLVHWMSAVMAEHMTG--QTHHDP-------GAVGMHY 330

  Fly   173 NFAAGNPHQAASLS-YTVHPHQMLISPNSHNHGQMH---SQHQQHQ-----HQQSQVQASH---- 224
            .: .||...|..:| |.:.|.    :|.||.|...|   |..|:::     |..:.:|..|    
  Fly   331 MW-NGNVDHAKDISDYNLWPP----TPRSHQHASEHHPMSLKQEYEAKMNDHHHNNLQKGHFLDD 390

  Fly   225 --VGNSLLQSSGGNNIGSNGSAGGVANAASCYYETSAGTAAPPPPPAAAMYPSMSVNVSMNMTMH 287
              :.:..:...||..:|::...||....||....:|.|.::                       |
  Fly   391 NRLEHHAVTGQGGLGLGASNGVGGGGGGASVVGNSSLGASS-----------------------H 432

  Fly   288 HGYGAGDAGGVPMQCSQMNWTPPSNSTSAAAAAAAVNVLYPPLLSPGHYPASATYSFTADFRAPA 352
            |...|..               ..|...|||:|||:.|:                          
  Fly   433 HAVAAAH---------------HHNQAVAAASAAALLVV-------------------------- 456

  Fly   353 PTGLGALPPLTVGEKESPSPPANSSLAGYYPTGVGNQGYTPPHKSPTSYQAAALGLSLSAFEDEE 417
                    |..:...:...|...||:||.:.||.|         |...||........|      
  Fly   457 --------PQPINASKMGGPGGVSSVAGGHATGGG---------SGRKYQCKMCPQIFS------ 498

  Fly   418 DSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTA 482
             |..||.........|.||..|..|.|.:|..|.|..|.|.|.|.:||||..|.:.|:|.::|..
  Fly   499 -SKADLQLHTQIHMREAKPYKCTQCSKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQ 562

  Fly   483 HVRTHTGQKPFRC--PICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSG 545
            |:|||||.||::|  |.|.:.|||.|::.:|.|.|..::|::|:||.|.|||..:|.:|:..|..
  Fly   563 HIRTHTGDKPYKCRHPGCQKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHKE 627

  Fly   546 E---KPYQCKLCLLRFSQSGNLNRHMRVHGNNNSSN-----------GSNGATGVGGESSTGSG- 595
            .   |.:.|:.|...::|...|.:||:.|.......           .:..|...||.::..:| 
  Fly   628 SKHLKTHICQYCGKSYTQETYLTKHMQKHAERTDKRPPIVPGSAAAIAAAAAAAAGGSANPANGP 692

  Fly   596 ---------------------VGGGNSLLTXQKPRSAGGF--------------QHYHPPHTHHM 625
                                 ....|.... ..|.||...              |..........
  Fly   693 PPPPNPAQHQRNNLGLPPVSIAPSDNGYWPKVSPDSAAAANAMEVMHQQQQQQQQQQQQQQQQQQ 757

  Fly   626 HHQHHAHHHHHAH 638
            ..|..|||||..|
  Fly   758 QQQQQAHHHHPQH 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 57/149 (38%)
C2H2 Zn finger 439..459 CDD:275368 8/19 (42%)
C2H2 Zn finger 467..487 CDD:275368 7/19 (37%)
C2H2 Zn finger 495..515 CDD:275368 9/21 (43%)
C2H2 Zn finger 523..543 CDD:275368 9/19 (47%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 4/26 (15%)
C2H2 Zn finger 519..539 CDD:275368 8/19 (42%)
COG5048 543..>647 CDD:227381 41/103 (40%)
C2H2 Zn finger 547..567 CDD:275368 7/19 (37%)
zf-H2C2_2 559..586 CDD:463886 13/26 (50%)
C2H2 Zn finger 575..597 CDD:275368 9/21 (43%)
C2H2 Zn finger 605..625 CDD:275368 9/19 (47%)
C2H2 Zn finger 636..656 CDD:275368 6/19 (32%)

Return to query results.
Submit another query.