DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and CG12605

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001261387.1 Gene:CG12605 / 38468 FlyBaseID:FBgn0035481 Length:619 Species:Drosophila melanogaster


Alignment Length:399 Identity:105/399 - (26%)
Similarity:160/399 - (40%) Gaps:86/399 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 HQAASLSYTVHPHQMLISPNSHNHGQMHSQHQQHQHQQSQVQASHVGNSLLQSSGGNNIGSNGSA 244
            |...|||.::.|   ||.|      .:.:..:|.|.|....:...:.||....|..:.|...||:
  Fly   249 HDLLSLSQSLPP---LIPP------CVVTIMKQEQEQLRSPEIQEISNSASSRSPQSTIRFIGSS 304

  Fly   245 -----GGVANAASCYYETSAGTAAPPPPPAAAMYPSMSVNVSMNMTMHHGYGAGDAGGVPMQCSQ 304
                 ||.:..|:        ..:|..||.:.  .|..|::.|:.:...|.   ...|.|     
  Fly   305 SYDLMGGSSEGAN--------NCSPLTPPNSD--HSSDVDIDMSSSSESGL---QQWGKP----- 351

  Fly   305 MNWTPPSNSTSAAAAAAAVNVLYPPLLSPGHYPASATYSFTADFRAPAPTGLGALPPLTVGEKES 369
               .|..|...|:|....:|:|      .|...||         :|.|         :|..:::.
  Fly   352 ---NPQQNQQRASALKMCLNML------DGRTKAS---------KAAA---------VTKQDRQE 389

  Fly   370 PSPPANSSLAGYYPTGVGNQGYTPPHKSPTSYQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEM 434
            |..|...|......:|.|     ||.:.|.: .||:||.|.|.              .|.:..:.
  Fly   390 PMQPRPKSAQSNASSGGG-----PPSEPPEN-PAASLGHSSSG--------------NGENYAKR 434

  Fly   435 KPNL--CRLCGKTYARPSTLKTHLRTH---SGERPYRCPDCNKSFSQAANLTAHVRTHTGQKPFR 494
            |...  |..|||.||..|.|..|.:||   ..:...:|..|.|::.....|..|:.||  :....
  Fly   435 KRGCYKCCECGKQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTH--KLSHS 497

  Fly   495 CPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFS 559
            |.||.:.||:...:..|:|:|:||:||.|..|.|:|:|.|.|..|::.|||:|.::|..|...|:
  Fly   498 CDICGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTFA 562

  Fly   560 QSGNLNRHM 568
            ....||:|:
  Fly   563 LKSYLNKHL 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 9/19 (47%)
zf-C2H2 439..459 CDD:278523 9/19 (47%)
zf-H2C2_2 452..476 CDD:290200 7/26 (27%)
C2H2 Zn finger 467..487 CDD:275368 5/19 (26%)
zf-H2C2_2 479..504 CDD:290200 8/24 (33%)
zf-C2H2_8 492..570 CDD:292531 30/77 (39%)
C2H2 Zn finger 495..515 CDD:275368 7/19 (37%)
zf-H2C2_2 507..531 CDD:290200 10/23 (43%)
C2H2 Zn finger 523..543 CDD:275368 8/19 (42%)
zf-H2C2_2 536..560 CDD:290200 9/23 (39%)
C2H2 Zn finger 551..571 CDD:275368 6/18 (33%)
CG12605NP_001261387.1 zf-C2H2 439..461 CDD:278523 9/21 (43%)
C2H2 Zn finger 441..461 CDD:275370 9/19 (47%)
C2H2 Zn finger 472..492 CDD:275368 5/19 (26%)
COG5048 492..>570 CDD:227381 30/79 (38%)
zf-C2H2 496..518 CDD:278523 7/21 (33%)
C2H2 Zn finger 498..518 CDD:275368 7/19 (37%)
zf-H2C2_2 511..534 CDD:290200 10/22 (45%)
zf-C2H2 524..546 CDD:278523 9/21 (43%)
C2H2 Zn finger 526..546 CDD:275368 8/19 (42%)
zf-H2C2_2 538..562 CDD:290200 8/23 (35%)
C2H2 Zn finger 554..571 CDD:275368 5/16 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23226
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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