DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment gl and Zkscan8

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001094044.1 Gene:Zkscan8 / 306974 RGDID:1308983 Length:588 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368
zf-C2H2 439..459 CDD:278523
zf-H2C2_2 452..476 CDD:290200
C2H2 Zn finger 467..487 CDD:275368
zf-H2C2_2 479..504 CDD:290200
zf-C2H2_8 492..570 CDD:292531
C2H2 Zn finger 495..515 CDD:275368
zf-H2C2_2 507..531 CDD:290200
C2H2 Zn finger 523..543 CDD:275368
zf-H2C2_2 536..560 CDD:290200
C2H2 Zn finger 551..571 CDD:275368
Zkscan8NP_001094044.1 SCAN 48..158 CDD:128708
SCAN 48..133 CDD:280241
KRAB_A-box 230..268 CDD:143639
zf-H2C2_2 319..343 CDD:290200
COG5048 <322..574 CDD:227381
C2H2 Zn finger 334..354 CDD:275368
zf-H2C2_2 347..371 CDD:290200
C2H2 Zn finger 364..382 CDD:275368
zf-H2C2_2 374..399 CDD:290200
zf-C2H2 388..410 CDD:278523
C2H2 Zn finger 390..410 CDD:275368
zf-H2C2_2 406..427 CDD:290200
C2H2 Zn finger 418..438 CDD:275368
zf-H2C2_2 434..455 CDD:290200
C2H2 Zn finger 446..466 CDD:275368
zf-H2C2_2 462..483 CDD:290200
C2H2 Zn finger 474..494 CDD:275368
zf-H2C2_2 490..511 CDD:290200
C2H2 Zn finger 502..522 CDD:275368
zf-H2C2_2 515..538 CDD:290200
C2H2 Zn finger 530..550 CDD:275368
zf-H2C2_2 543..567 CDD:290200
C2H2 Zn finger 558..578 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.