DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and Zscan21

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001012021.1 Gene:Zscan21 / 304342 RGDID:1309981 Length:554 Species:Rattus norvegicus


Alignment Length:270 Identity:84/270 - (31%)
Similarity:118/270 - (43%) Gaps:65/270 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   419 SNEDLDGDEGSSGGEMKP------NLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQA 477
            |.:|....:|:.....:|      .:|..|||.::..|.|..|.|||:||:||.|..|.|:||.:
  Rat   334 SLQDTGSRKGAEPASARPAPGEKRYICAECGKAFSNSSNLTKHRRTHTGEKPYVCTKCGKAFSHS 398

  Fly   478 ANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRI 542
            :|||.|.|||...:|:.|. |.:.|.|||.:..|.|.|:.|.||:|..|.|:||...:|.:|.||
  Rat   399 SNLTLHYRTHLVDRPYDCK-CGKAFGQSSDLLKHQRMHTEEAPYQCKDCGKAFSGKGSLIRHYRI 462

  Fly   543 HSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNNNSSNGSNGATGVGGESSTGSGVGGGNSLLTXQK 607
            |:|||||||..|...|||...|:.|.|:|                                |.:|
  Rat   463 HTGEKPYQCNECGKSFSQHAGLSSHQRLH--------------------------------TGEK 495

  Fly   608 P---RSAGGFQHYHPPHTHHMHHQHHAHHHHHAHMGNYDYGNYSIGDYTPPGATQNYSGYYFCAL 669
            |   :..|          ...:|..:.:.||..|.|...|             ..|:.|..||:.
  Rat   496 PYKCKECG----------KAFNHSSNFNKHHRIHTGEKPY-------------WCNHCGKTFCSK 537

  Fly   670 NKAPKFERFY 679
            :...|.:|.:
  Rat   538 SNLSKHQRVH 547

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 65/150 (43%)
C2H2 Zn finger 439..459 CDD:275368 8/19 (42%)
C2H2 Zn finger 467..487 CDD:275368 10/19 (53%)
C2H2 Zn finger 495..515 CDD:275368 8/19 (42%)
C2H2 Zn finger 523..543 CDD:275368 8/19 (42%)
C2H2 Zn finger 551..571 CDD:275368 8/19 (42%)
Zscan21NP_001012021.1 SCAN 119..229 CDD:128708
COG5048 <338..534 CDD:227381 78/251 (31%)
C2H2 Zn finger 360..380 CDD:275368 8/19 (42%)
C2H2 Zn finger 388..408 CDD:275368 10/19 (53%)
C2H2 Zn finger 418..435 CDD:275368 7/16 (44%)
C2H2 Zn finger 443..463 CDD:275368 8/19 (42%)
C2H2 Zn finger 471..491 CDD:275368 8/19 (42%)
C2H2 Zn finger 499..519 CDD:275368 4/29 (14%)
C2H2 Zn finger 527..547 CDD:275368 6/19 (32%)
zf-C2H2 527..547 CDD:395048 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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