DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and Zscan2

DIOPT Version :9

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001369440.1 Gene:Zscan2 / 22691 MGIID:99176 Length:614 Species:Mus musculus


Alignment Length:358 Identity:111/358 - (31%)
Similarity:150/358 - (41%) Gaps:99/358 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   378 LAGYYPTGVGNQGYTPP------------------HKSPTSYQAAALGLSLSAFEDEEDSNEDLD 424
            |.|...|.:|.:.|..|                  |.....|:....|.|.|     :.||  ..
Mouse   209 LIGLQGTYLGEKPYECPQCGKTFSRKSHLITHERTHTGEKYYKCDECGKSFS-----DGSN--FS 266

  Fly   425 GDEGSSGGEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTG 489
            ..:.:..|| ||..||.|||:::|.:.|.||.|.|:||:|::|.:|.||||::.||.||.|||||
Mouse   267 RHQTTHTGE-KPYKCRDCGKSFSRSANLITHQRIHTGEKPFQCAECGKSFSRSPNLIAHQRTHTG 330

  Fly   490 QKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLC 554
            :||:.||.|.:.|...||:.||...|:||:||.|..|.:|||.:|.|.:|.|||:|||||:|..|
Mouse   331 EKPYSCPECGKSFGNRSSLNTHQGIHTGEKPYACKECGESFSYNSNLIRHQRIHTGEKPYKCTEC 395

  Fly   555 LLRFSQSGNLNRHMRVHG----------NNNSSNGSNGAT-------------GVGGES------ 590
            ..:||||..|..|.|.|.          ..|.|..||.||             |:.|:|      
Mouse   396 GQKFSQSSALITHRRTHTGEKPYQCGECGKNFSRSSNLATHRRTHLVEKPYKCGLCGKSFSQSSS 460

  Fly   591 -----------------STGSGVGGGNSLL------TXQKPRSAG----GFQHYHPPHTHHMHHQ 628
                             :.|......::|:      |.:||...|    ||........|...|.
Mouse   461 LIAHQGTHTGEKPYECLTCGESFSWSSNLIKHQRTHTGEKPYRCGDCGKGFSQRSQLVVHQRTHT 525

  Fly   629 HHAHH-----------------HHHAHMGNYDY 644
            ....:                 |..||:|:..|
Mouse   526 GEKPYKCLMCGKSFSRGSILVMHQRAHLGDKPY 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 C2H2 Zn finger 439..459 CDD:275368 10/19 (53%)
zf-C2H2 439..459 CDD:278523 10/19 (53%)
zf-H2C2_2 452..476 CDD:290200 13/23 (57%)
C2H2 Zn finger 467..487 CDD:275368 11/19 (58%)
zf-H2C2_2 479..504 CDD:290200 15/24 (63%)
zf-C2H2_8 492..570 CDD:292531 38/77 (49%)
C2H2 Zn finger 495..515 CDD:275368 8/19 (42%)
zf-H2C2_2 507..531 CDD:290200 11/23 (48%)
C2H2 Zn finger 523..543 CDD:275368 9/19 (47%)
zf-H2C2_2 536..560 CDD:290200 13/23 (57%)
C2H2 Zn finger 551..571 CDD:275368 9/19 (47%)
Zscan2NP_001369440.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 42..73
SCAN 69..131 CDD:396558
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..200
COG5048 220..600 CDD:227381 107/347 (31%)
C2H2 Zn finger 224..244 CDD:275368 1/19 (5%)
C2H2 Zn finger 252..272 CDD:275368 5/26 (19%)
C2H2 Zn finger 280..300 CDD:275368 10/19 (53%)
C2H2 Zn finger 308..328 CDD:275368 11/19 (58%)
C2H2 Zn finger 336..356 CDD:275368 8/19 (42%)
C2H2 Zn finger 364..384 CDD:275368 9/19 (47%)
C2H2 Zn finger 392..412 CDD:275368 9/19 (47%)
C2H2 Zn finger 420..440 CDD:275368 6/19 (32%)
C2H2 Zn finger 448..468 CDD:275368 3/19 (16%)
C2H2 Zn finger 476..496 CDD:275368 2/19 (11%)
C2H2 Zn finger 504..524 CDD:275368 4/19 (21%)
C2H2 Zn finger 532..552 CDD:275368 1/19 (5%)
C2H2 Zn finger 560..580 CDD:275368
C2H2 Zn finger 588..608 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 44 1.000 Domainoid score I12226
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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