DRSC/TRiP Functional Genomics Resources

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Protein Alignment gl and che-1

DIOPT Version :10

Sequence 1:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_001076598.1 Gene:che-1 / 183847 WormBaseID:WBGene00000483 Length:273 Species:Caenorhabditis elegans


Alignment Length:342 Identity:110/342 - (32%)
Similarity:142/342 - (41%) Gaps:133/342 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 SVNVSMNMTMHHGYG---AGD------AGGVPMQCSQM-----------------------NWTP 309
            |.|....|.|||||.   |.|      :.|...|..|.                       :|  
 Worm    17 SANYIPQMQMHHGYQDFYASDSTSSMPSSGTTQQALQQTENGIIQGQNGSDHGAYGGWRQHDW-- 79

  Fly   310 PSNSTSAAAAAAAVNVLYPPL-LSPG----------HYPASATYSFTADFRAPAPTGLGALPPLT 363
              ||||:.:....:.:....| :|.|          ....::.:..|..||...|:||..:.|  
 Worm    80 --NSTSSWSIGNQLEMENGTLTMSHGATNDGNIRNNQQMMTSNHITTDSFRQIPPSGLCYMDP-- 140

  Fly   364 VGEKESPSPPANSSLAGYYPTGVGNQGYTP----PHKSPTSYQAAALGLSLSAFEDEEDSNEDLD 424
                                        ||    |.|.|...|                      
 Worm   141 ----------------------------TPSLRLPKKEPLPVQ---------------------- 155

  Fly   425 GDEGSSGGEMKPNLCRLCGKTYARPSTLKTHLRTHSGERPYRCPDCNKSFSQAANLTAHVRTHTG 489
                                   ||....|       .:|:||..|.|:||||||||||.|.|||
 Worm   156 -----------------------RPMARST-------PKPFRCQTCGKAFSQAANLTAHKRIHTG 190

  Fly   490 QKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLC 554
            :|||.||:|:|.||||||:.||.|||:|||||.|:.|:|:|:||||||||||.|:|.|||.|.:|
 Worm   191 EKPFMCPVCNRPFSQSSSLVTHRRTHTGERPYPCAQCEKAFTDSSTLTKHLRTHTGHKPYVCSIC 255

  Fly   555 LLRFSQSGNLNRHMRVH 571
            :::|:|||||:|||:.|
 Worm   256 MMKFTQSGNLHRHMKTH 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
glNP_001262708.1 COG5048 <426..571 CDD:227381 75/144 (52%)
C2H2 Zn finger 439..459 CDD:275368 3/19 (16%)
C2H2 Zn finger 467..487 CDD:275368 14/19 (74%)
C2H2 Zn finger 495..515 CDD:275368 13/19 (68%)
C2H2 Zn finger 523..543 CDD:275368 14/19 (74%)
C2H2 Zn finger 551..571 CDD:275368 11/19 (58%)
che-1NP_001076598.1 zf-C2H2 166..188 CDD:395048 15/21 (71%)
C2H2 Zn finger 168..188 CDD:275368 14/19 (74%)
PHA00733 <193..241 CDD:177301 33/47 (70%)
C2H2 Zn finger 196..216 CDD:275368 13/19 (68%)
C2H2 Zn finger 224..244 CDD:275368 14/19 (74%)
zf-H2C2_2 237..261 CDD:463886 14/23 (61%)
C2H2 Zn finger 252..272 CDD:275368 11/19 (58%)

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